Evidence map›Paper›PMID 19019984›Full record

ArticleMolecular biology of the cell2009

Sequence-specific retention and regulated integration of a nascent membrane protein by the endoplasmic reticulum Sec61 translocon.

David Pitonzo, Zhongying Yang, Yoshihiro Matsumura, Arthur E Johnson, William R Skach

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
  2. Functional Consequences of CFTR Interactions in Cystic Fibrosis.International journal of molecular sciences · 2024
    Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Marginally hydrophobic transmembrane α-helices shaping membrane protein folding.Protein science : a publication of the Protein Society · 2015
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

David PitonzoDepartment of Biochemistry and Molecular Biology, Oregon Health and Sciences University, Portland, OR 97239, USA.
Zhongying Yang
Yoshihiro Matsumura
Arthur E Johnson
William R Skach
Oregon Health & Science University · USTexas A&M University System · US

Funding

THE INTERACTION OF AA-TRNA WITH EF-TU AND RIBOSOMESR01GM026494 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI JOHNSON, ARTHUR E · 1985 to 2011
$3.7M
MECHANISMS OF POLYTOPIC PROTEIN BIOGENESIS IN THE ERR01GM053457 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SKACH, WILLIAM R · 1996 to 2013
$3.5M
BIOGENESIS AND MOLECULAR PATHOGENESIS OF CFTRR01DK051818 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SKACH, WILLIAM R · 1997 to 2012
$2.9M
NIDDK NIH HHS DK-51818NIDDK NIH HHS R01 DK051818NIGMS NIH HHS GM-26494NIGMS NIH HHS GM-53457NIGMS NIH HHS R01 GM026494NIGMS NIH HHS R01 GM053457
6 · The paper itself

Abstract

A defining feature of eukaryotic polytopic protein biogenesis involves integration, folding, and packing of hydrophobic transmembrane (TM) segments into the apolar environment of the lipid bilayer. In the endoplasmic reticulum, this process is facilitated by the Sec61 translocon. Here, we use a photocross-linking approach to examine integration intermediates derived from the ATP-binding cassette transporter cystic fibrosis transmembrane conductance regulator (CFTR) and show that the timing of translocon-mediated integration can be regulated at specific stages of synthesis. During CFTR biogenesis, the eighth TM segment exits the ribosome and enters the translocon in proximity to Sec61alpha. This interaction is initially weak, and TM8 spontaneously dissociates from the translocon when the nascent chain is released from the ribosome. Polypeptide extension by only a few residues, however, results in stable TM8-Sec61alpha photocross-links that persist after peptidyl-tRNA bond cleavage. Retention of these untethered polypeptides within the translocon requires ribosome binding and is mediated by an acidic residue, Asp924, near the center of the putative TM8 helix. Remarkably, at this stage of synthesis, nascent chain release from the translocon is also strongly inhibited by ATP depletion. These findings contrast with passive partitioning models and indicate that Sec61alpha can retain TMs and actively inhibit membrane integration in a sequence-specific and ATP-dependent manner.

Indexed as

Adenosine TriphosphateAmino Acid SequenceAspartic AcidBase SequenceCross-Linking ReagentsCystic Fibrosis Transmembrane Conductance RegulatorEndoplasmic ReticulumGlycosylationMembrane ProteinsMolecular Sequence DataProtein Structure, SecondaryRibosomesSEC Translocation ChannelsAdenosine TriphosphateAspartic AcidCross-Linking ReagentsCystic Fibrosis Transmembrane Conductance RegulatorMembrane ProteinsSEC Translocation Channels

Identifiers

PMID19019984
PMCPMC2626564
OpenAlexW1968604972

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.