Evidence map›Paper›PMID 19019971›Full record

ArticleJournal of virology2009

In vivo fitness cost of the M184V mutation in multidrug-resistant human immunodeficiency virus type 1 in the absence of lamivudine.

Roger Paredes, Manish Sagar, Vincent C Marconi, Rebecca Hoh, Jeffrey N Martin, Neil T Parkin, Christos J Petropoulos, Steven G Deeks, Daniel R Kuritzkes

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  20. Quasispecies and virus.European biophysics journal : EBJ · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Roger ParedesBrigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Manish Sagar
Vincent C Marconi
Rebecca Hoh
Jeffrey N Martin
Neil T Parkin
Christos J Petropoulos
Steven G Deeks
Daniel R Kuritzkes

Funding

AIDS Clinical Trials Group NetworkU01AI068636 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI KURITZKES, DANIEL R. · 2006 to 2010
$147.1M
UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Daniel Lingwood · 2004 to 2026
$94.4M
UCSF-GIVI CENTER FOR AIDS RESEARCHP30MH059037 · NIMH · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FEINBERG, MARK A · 1998 to 2001
$4.9M
HIV-1 Resistance to Chemokine Receptor AntagonistsR37AI055357 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KURITZKES, DANIEL R. · 2007 to 2016
$4.4M
Immunologic Control of Drug-resistant HIV-1R01AI052745 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2002 to 2005
$2.0M
HIV-1 resistance to nucleoside analoguesR01AI042567 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KURITZKES, DANIEL R · 1998 to 2004
$1.7M
HIV-1 THERAPEUTICS AND DRUG RESISTANCEK24RR016482 · NCRR · UNIVERSITY OF COLORADO DENVER · PI KURITZKES, DANIEL R. · 2001 to 2010
$1.0M
NCRR NIH HHS K24 RR016482NCRR NIH HHS K24 RR16482NCRR NIH HHS UL1 RR024131NCRR NIH HHS UL1 RR024131-01NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI042567NIAID NIH HHS R01 AI052745NIAID NIH HHS R01 AI42567NIAID NIH HHS R37 AI055357NIAID NIH HHS U01 AI068636NIMH NIH HHS P30 MH59037
6 · The paper itself

Abstract

Lamivudine therapy selects for the M184V mutation. Although this mutation reduces the replicative capacity of human immunodeficiency virus in vitro, its impact on viral fitness in vivo has not been well defined. We used quantitative allele-specific PCR to precisely calculate the fitness differences between the mutated M184V virus and one that had reverted to the wild type in a cohort of patients by selectively interrupting reverse transcriptase inhibitor therapy, and we found that the M184V variants were consistently 4 to 8% less fit than the wild type in the absence of drug. After a lag phase of variable duration, wild-type variants emerged due to continued evolution of pol and back mutation rather than through emergence of an archived wild-type variant.

Indexed as

Drug Resistance, Multiple, ViralMutation, MissenseAnti-HIV AgentsHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansLamivudinePhylogenySequence Analysis, DNAAnti-HIV AgentsHIV Reverse TranscriptaseLamivudinereverse transcriptase, Human immunodeficiency virus 1

Identifiers

PMID19019971
PMCPMC2643770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.