Evidence map›Paper›PMID 19019970›Full record

ArticleJournal of virology2009

Neutralization-sensitive R5-tropic simian-human immunodeficiency virus SHIV-2873Nip, which carries env isolated from an infant with a recent HIV clade C infection.

Nagadenahalli B Siddappa, Ruijiang Song, Victor G Kramer, Agnès-Laurence Chenine, Vijayakumar Velu, Helena Ong, Robert A Rasmussen, Ricky D Grisson, Charles Wood, Hong Zhang and 6 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Nagadenahalli B SiddappaDana-Farber Cancer Institute, Boston, MA 02115, USA.
Ruijiang Song
Victor G Kramer
Agnès-Laurence Chenine
Vijayakumar Velu
Helena Ong
Robert A Rasmussen
Ricky D Grisson
Charles Wood
Hong Zhang
Chipeppo Kankasa
Rama Rao Amara
James G Else
Francis J Novembre
David C Montefiori
Ruth M Ruprecht
Dana-Farber Cancer Institute · USHarvard University · USBipar · FREmory University · USUniversity of Nebraska–Lincoln · USDuke University Hospital · USUniversity Teaching Hospital · ZM

Funding

YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
Virology and ImmunologyP01AI048240 · NIAID · UNIVERSITY OF WASHINGTON · PI RUPRECHT, RUTH MARGRIT · 2000 to 2020
$46.7M
VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
Infant Immunoprophylaxis against a Primate LentivirusR37AI034266 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI RUPRECHT, RUTH MARGRIT · 2003 to 2012
$7.7M
Supplement: Fogarty Training in HIV- and AIDS Associated Diseases/MalignanciesD43TW001429 · FIC · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2015
$7.2M
SHIV Transmission Through Oral Versus Other MucosaeR01DE016013 · NIDCR · DANA-FARBER CANCER INSTITUTE · PI RUPRECHT, RUTH MARGRIT · 2004 to 2007
$2.6M
Evolution of Clade C HIV-1 in Infected ChildrenR01HD039620 · NICHD · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2001 to 2005
$1.6M
MECHANISMS OF ORAL SIV TRANSMISSIONR01DE012937 · NIDCR · DANA-FARBER CANCER INSTITUTE · PI RUPRECHT, RUTH MARGRIT · 1999 to 2003
$1.5M
FIC NIH HHS D43 TW001429FIC NIH HHS TW01429NCRR NIH HHS P20 RR015635NCRR NIH HHS P51 RR000165NCRR NIH HHS RR-000165NCRR NIH HHS RR15635NIAID NIH HHS N01 AI030034NIAID NIH HHS P01 AI048240NIAID NIH HHS R37 AI034266NICHD NIH HHS HD39620NICHD NIH HHS R01 HD039620NIDCR NIH HHS R01 DE012937NIDCR NIH HHS R01 DE016013
6 · The paper itself

Abstract

Human immunodeficiency virus clade C (HIV-C) accounts for >56% of all HIV infections worldwide. To investigate vaccine safety and efficacy in nonhuman primates, a pathogenic, R5-tropic, neutralization-sensitive simian-human immunodeficiency virus (SHIV) carrying HIV-C env would be desirable. We have constructed SHIV-2873Ni, an R5-tropic SHIV carrying a primary pediatric HIV-C env gene isolated from a 2-month-old Zambian infant, who died within 1 year of birth. SHIV-2873Ni was constructed using SHIV-1157ipd3N4 (R. J. Song, A. L. Chenine, R. A. Rasmussen, C. R. Ruprecht, S. Mirshahidi, R. D. Grisson, W. Xu, J. B. Whitney, L. M. Goins, H. Ong, P. L. Li, E. Shai-Kobiler, T. Wang, C. M. McCann, H. Zhang, C. Wood, C. Kankasa, W. E. Secor, H. M. McClure, E. Strobert, J. G. Else, and R. M. Ruprecht. J. Virol. 80:8729-8738, 2006) as the backbone, since the latter contains additional NF-kappaB sites in the long terminal repeats to enhance viral replicative capacity. The parental virus, SHIV-2873Ni, was serially passaged through five rhesus monkeys (RMs); SHIV-2873Nip, the resulting passaged virus, was reisolated from the fourth recipient about 1 year postinoculation. SHIV-2873Nip was replication competent in RM peripheral blood mononuclear cells of all random donors tested and was exclusively R5 tropic, and its env gene clustered with HIV-C by phylogenetic analysis; its moderate [corrected] sensitivity to neutralization led to classification as a tier 2 [corrected] virus. Indian-origin RMs were inoculated by different mucosal routes, resulting in high peak viral RNA loads. Signs of virus-induced disease include depletion of gut CD4(+) T lymphocytes, loss of memory T cells in blood, and thrombocytopenia that resulted in fatal cerebral hemorrhage. SHIV-2873Nip is a highly replication-competent, mucosally transmissible, pathogenic R5-tropic virus that will be useful to study viral pathogenesis and to assess the efficacy of immunogens targeting HIV-C Env.

Indexed as

Neutralization TestsAnimalsBase SequenceDisease ProgressionDNA PrimersGenes, envHIVHIV InfectionsHumansInfantMacaca mulattaPhylogenySimian Immunodeficiency VirusVirus ReplicationDNA Primers

Identifiers

PMID19019970
PMCPMC2620886
OpenAlexW2147229588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.