Evidence map›Paper›PMID 19019209›Full record

ArticleBMC genomics2008

A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao.

Jorge M C Mondego, Marcelo F Carazzolle, Gustavo G L Costa, Eduardo F Formighieri, Lucas P Parizzi, Johana Rincones, Carolina Cotomacci, Dirce M Carraro, Anderson F Cunha, Helaine Carrer and 20 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 157 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Review
  8. Article
  9. Article
  10. Proceedings of the National Academy of Sciences of the United States of America · 2020
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  11. Draft genomic sequence of Armillaria gallica 012m: insights into its symbiotic relationship with Gastrodia elata.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
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  12. Article
  13. Brazilian fungal diversity represented by DNA markers generated over 20 years.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
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  14. Article
  15. Article
  16. Fungal evolution: major ecological adaptations and evolutionary transitions.Biological reviews of the Cambridge Philosophical Society · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 11 institutions in 2 countries.

Jorge M C MondegoLaboratório de Genômica e Expressão, Departamento de Genética e Evolução, Instituto de Biologia, Universidade Estadual de Campinas, CP 6109, 13083-970, Campinas, SP, Brazil. jmcmondego@lge.ibi.unicamp.br
Marcelo F Carazzolle
Gustavo G L Costa
Eduardo F Formighieri
Lucas P Parizzi
Johana Rincones
Carolina Cotomacci
Dirce M Carraro
Anderson F Cunha
Helaine Carrer
Ramon O Vidal
Raíssa C Estrela
Odalys García
Daniela P T Thomazella
Bruno V de Oliveira
Acássia Bl Pires
Maria Carolina S Rio
Marcos Renato R Araújo
Marcos H de Moraes
Luis A B Castro
Karina P Gramacho
Marilda S Gonçalves
José P Moura Neto
Aristóteles Góes Neto
Luciana V Barbosa
Mark J Guiltinan
Bryan A Bailey
Lyndel W Meinhardt
Julio Cm Cascardo
Gonçalo A G Pereira
Universidade Estadual de Campinas (UNICAMP) · BRAgricultural Research Service · USHospital Ana Nery · BRUniversidade Estadual de Santa Cruz · BRAC Camargo Hospital · BRBrazilian Agricultural Research Corporation · BRComissão Executiva do Plano da Lavoura Cacaueira · BRPennsylvania State University · USUniversidade de São Paulo · BRUniversidade Estadual de Feira de Santana · BRUniversidade Federal da Bahia · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe basidiomycete fungus Moniliophthora perniciosa is the causal agent of Witches' Broom Disease (WBD) in cacao (Theobroma cacao). It is a hemibiotrophic pathogen that colonizes the apoplast of cacao's meristematic tissues as a biotrophic pathogen, switching to a saprotrophic lifestyle during later stages of infection. M. perniciosa, together with the related species M. roreri, are pathogens of aerial parts of the plant, an uncommon characteristic in the order Agaricales. A genome survey (1.9x coverage) of M. perniciosa was analyzed to evaluate the overall gene content of this phytopathogen.

resultsGenes encoding proteins involved in retrotransposition, reactive oxygen species (ROS) resistance, drug efflux transport and cell wall degradation were identified. The great number of genes encoding cytochrome P450 monooxygenases (1.15% of gene models) indicates that M. perniciosa has a great potential for detoxification, production of toxins and hormones; which may confer a high adaptive ability to the fungus. We have also discovered new genes encoding putative secreted polypeptides rich in cysteine, as well as genes related to methylotrophy and plant hormone biosynthesis (gibberellin and auxin). Analysis of gene families indicated that M. perniciosa have similar amounts of carboxylesterases and repertoires of plant cell wall degrading enzymes as other hemibiotrophic fungi. In addition, an approach for normalization of gene family data using incomplete genome data was developed and applied in M. perniciosa genome survey.

conclusionThis genome survey gives an overview of the M. perniciosa genome, and reveals that a significant portion is involved in stress adaptation and plant necrosis, two necessary characteristics for a hemibiotrophic fungus to fulfill its infection cycle. Our analysis provides new evidence revealing potential adaptive traits that may play major roles in the mechanisms of pathogenicity in the M. perniciosa/cacao pathosystem.

Indexed as

Genome, FungalAgaricalesCacaoCluster AnalysisDNA, FungalExpressed Sequence TagsGenes, FungalGenomicsModels, GeneticMultigene FamilyPlant DiseasesSequence AlignmentSequence Analysis, DNADNA, Fungal

Identifiers

PMID19019209
PMCPMC2644716
OpenAlexW2138517984

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.