Evidence map›Paper›PMID 19018285›Full record

ArticlePloS one2008

A green fluorescent protein with photoswitchable emission from the deep sea.

Alexander Vogt, Cecilia D'Angelo, Franz Oswald, Andrea Denzel, Charles H Mazel, Mikhail V Matz, Sergey Ivanchenko, G Ulrich Nienhaus, Jörg Wiedenmann

Abstract read
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Seeing in the deep-sea: visual adaptations in lanternfishes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alexander VogtInstitute of General Zoology and Endocrinology, University of Ulm, Ulm, Germany.
Cecilia D'Angelo
Franz Oswald
Andrea Denzel
Charles H Mazel
Mikhail V Matz
Sergey Ivanchenko
G Ulrich Nienhaus
Jörg Wiedenmann

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A colorful variety of fluorescent proteins (FPs) from marine invertebrates are utilized as genetically encoded markers for live cell imaging. The increased demand for advanced imaging techniques drives a continuous search for FPs with new and improved properties. Many useful FPs have been isolated from species adapted to sun-flooded habitats such as tropical coral reefs. It has yet remained unknown if species expressing green fluorescent protein (GFP)-like proteins also exist in the darkness of the deep sea. Using a submarine-based and -operated fluorescence detection system in the Gulf of Mexico, we discovered ceriantharians emitting bright green fluorescence in depths between 500 and 600 m and identified a GFP, named cerFP505, with bright fluorescence emission peaking at 505 nm. Spectroscopic studies showed that approximately 15% of the protein bulk feature reversible ON/OFF photoswitching that can be induced by alternating irradiation with blue und near-UV light. Despite being derived from an animal adapted to essentially complete darkness and low temperatures, cerFP505 maturation in living mammalian cells at 37 degrees C, its brightness and photostability are comparable to those of EGFP and cmFP512 from shallow water species. Therefore, our findings disclose the deep sea as a potential source of GFP-like molecular marker proteins.

Indexed as

Amino Acid SequenceAnimalsAnthozoaCloning, MolecularDNA, ComplementaryFluorescenceGreen Fluorescent ProteinsInvertebratesLightLuminescent ProteinsMolecular Sequence DataSequence Homology, Amino AcidSpectrometry, FluorescenceSpectrophotometry, UltravioletTemperatureDNA, ComplementaryGreen Fluorescent ProteinsLuminescent Proteins

Identifiers

PMID19018285
PMCPMC2582951

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.