Evidence map›Paper›PMID 19017876›Full record

ArticleChest2009

Genetic associations with hypoxemia and pulmonary arterial pressure in COPD.

Peter J Castaldi, Craig P Hersh, John J Reilly, Edwin K Silverman

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Chest, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Multi-Omics Identification of Biomarkers for High-Altitude Pulmonary Hypertension.Journal of cardiovascular development and disease · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Notch activation of CaHypertension research : official journal of the Japanese Society of Hypertension · 2017
    Article
  8. Serpine2 deficiency results in lung lymphocyte accumulation and bronchus-associated lymphoid tissue formation.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Hypoxemia in patients with COPD: cause, effects, and disease progression.International journal of chronic obstructive pulmonary disease · 2011
    Review
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Peter J CastaldiInstitute for Clinical Research and Health Policy Studies, Tufts Medical Center, Boston, MA.
Craig P HershChanning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA. Electronic address: craig.hersh@channing.harvard.edu.
John J ReillyPulmonary and Critical Care Division, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.
Edwin K SilvermanChanning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.
Harvard University · USTufts Medical Center · US

Funding

THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
SYSTEMS APPROACHES TO THE EPIDEMIOLOGY, GENETICS AND GENOMICS OF LUNG DISEASEST32HL007427 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI DAWN L DEMEO, Edwin K Silverman · 1985 to 2026
$13.6M
Statistical GeneticsP01HL083069 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2011
$12.2M
Fine Mapping of COPD Susceptibility GenesR01HL075478 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2004 to 2012
$6.4M
POSTDOCTORAL FELLOWSHIPS IN HEALTH SERVICES RESEARCHT32HS000060 · AHRQ · TUFTS MEDICAL CENTER · PI SELKER, HARRY P. · 1993 to 2012
$2.9M
Impact of CPAP on Functional Outcomes in Milder OSAR01HL076101 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WEAVER, TERRI ELIZABETH · 2003 to 2006
$2.6M
Modeling of Lung HIV Cytokine/Chemokine NetworksR01HL076114 · NHLBI · BOSTON MEDICAL CENTER · PI SKOLNIK, PAUL R · 2003 to 2006
$1.8M
Training Program in Academic Pulmonary MedicineT32HL076118 · NHLBI · EMORY UNIVERSITY · PI HART, C MICHAEL · 2004 to 2013
$1.7M
Genetics of COPD in NETTR01HL071393 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2002 to 2005
$1.5M
Neurotrophins and Development of Baroreceptor Pathways.R01HL076113 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI BALKOWIEC, AGNIESZKA Z · 2005 to 2009
$1.5M
CLINICAL COORDINATING CENTER FOR LVRS-N01HR76119-268076119-268076119N01HR076119 · HR · JOHNS HOPKINS UNIVERSITY · PI PIANTADOSI, STEVEN · 1997 to 2006
$871k
Fine Mapping of a COPD Locus on Chromosome 19qK08HL080242 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI HERSH, CRAIG P · 2005 to 2009
$668k
AHRQ HHS T32 HS000060AHRQ HHS T32 HS 00060NHLBI NIH HHS F32 HL094035NHLBI NIH HHS K08 HL 080242NHLBI NIH HHS K08 HL080242NHLBI NIH HHS N01 HR076101NHLBI NIH HHS N01 HR076102NHLBI NIH HHS N01 HR076103NHLBI NIH HHS N01 HR076104NHLBI NIH HHS N01 HR076105NHLBI NIH HHS N01 HR076106NHLBI NIH HHS N01 HR076107NHLBI NIH HHS N01 HR076108NHLBI NIH HHS N01 HR076109NHLBI NIH HHS N01 HR076110NHLBI NIH HHS N01 HR076111NHLBI NIH HHS N01 HR076112NHLBI NIH HHS N01 HR076113NHLBI NIH HHS N01 HR076114NHLBI NIH HHS N01 HR076115NHLBI NIH HHS N01 HR076116NHLBI NIH HHS N01 HR076118NHLBI NIH HHS N01 HR076119NHLBI NIH HHS N01 HR 76101NHLBI NIH HHS N01 HR 76102NHLBI NIH HHS N01 HR 76103NHLBI NIH HHS N01 HR 76104NHLBI NIH HHS N01 HR 76105NHLBI NIH HHS N01 HR 76106NHLBI NIH HHS N01 HR 76107NHLBI NIH HHS N01 HR 76108NHLBI NIH HHS N01 HR 76109NHLBI NIH HHS N01 HR 76110NHLBI NIH HHS N01 HR 76111NHLBI NIH HHS N01 HR 76112NHLBI NIH HHS N01 HR 76113NHLBI NIH HHS N01 HR 76114NHLBI NIH HHS N01 HR 76115NHLBI NIH HHS N01 HR 76116NHLBI NIH HHS N01 HR 76118NHLBI NIH HHS N01 HR 76119NHLBI NIH HHS P01 HL 083069NHLBI NIH HHS P01 HL083069NHLBI NIH HHS R01 HL071393NHLBI NIH HHS R01 HL 075478NHLBI NIH HHS R01 HL075478NHLBI NIH HHS R01 HL 71393NHLBI NIH HHS T32 HL007427NHLBI NIH HHS U01 HL 065899NHLBI NIH HHS U01 HL065899
6 · The paper itself

Abstract

backgroundHypoxemia, hypercarbia, and pulmonary arterial hypertension are known complications of advanced COPD. We sought to identify genetic polymorphisms associated with these traits in a population of patients with severe COPD from the National Emphysema Treatment Trial (NETT).

methodsIn 389 participants from the NETT Genetics Ancillary Study, single-nucleotide polymorphisms (SNPs) were genotyped in five candidate genes previously associated with COPD susceptibility (EPHX1, SERPINE2, SFTPB, TGFB1, and GSTP1). Linear regression models were used to test for associations among these SNPs and three quantitative COPD-related traits (Pao(2), Paco(2), and pulmonary artery systolic pressure). Genes associated with hypoxemia were tested for replication in probands from the Boston Early-Onset COPD Study.

resultsIn the NETT Genetics Ancillary Study population, SNPs in microsomal epoxide hydrolase (EPHX1) [p = 0.01 to 0.04] and serpin peptidase inhibitor, clade E, member 2 (SERPINE2) [p = 0.04 to 0.008] were associated with hypoxemia. One SNP within surfactant protein B (SFTPB) was associated with pulmonary artery systolic pressure (p = 0.01). In probands from the Boston Early-Onset COPD Study, SNPs in EPHX1 and in SERPINE2 were associated with the requirement for supplemental oxygen.

conclusionsIn participants with severe COPD, SNPs in EPHX1 and SERPINE2 were associated with hypoxemia in two separate study populations, and SNPs from SFTPB were associated with pulmonary artery pressure in the NETT participants.

Indexed as

Polymorphism, Single NucleotideAgedAmyloid beta-Protein PrecursorEpoxide HydrolasesFemaleHumansHypercapniaHypertension, PulmonaryHypoxiaLinkage DisequilibriumMaleMiddle AgedProtease NexinsPulmonary Disease, Chronic ObstructivePulmonary Surfactant-Associated Protein BReceptors, Cell SurfaceAmyloid beta-Protein PrecursorEpoxide HydrolasesProtease NexinsPulmonary Surfactant-Associated Protein BReceptors, Cell SurfaceSerpin E2SERPINE2 protein, human

Identifiers

PMID19017876
PMCPMC2906241
OpenAlexW2102229646

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.