Evidence map›Paper›PMID 19017802›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai.

Yong-Seok Lee, Sun-Lim Choi, Tae-Hyung Kim, Jin-A Lee, Hyong Kyu Kim, Hyoung Kim, Deok-Jin Jang, Jennifer J Lee, Sunghoon Lee, Gwang Sik Sin and 8 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Endogenous l- to d-amino acid residue isomerization modulates selectivity between distinct neuropeptide receptor family members.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  14. The transcriptome of the early life history stages of the California Sea Hare Aplysia californica.Comparative biochemistry and physiology. Part D, Genomics & proteomics · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 3 countries.

Yong-Seok LeeNational Creative Research Initiative, Center for Memory and Institute of Molecular Biology and Genetics, Department of Biological Sciences, College of Natural Sciences, Seoul National University, San 56-1 Silim-dong, Gwanak-gu, Seoul 151-747, Korea.
Sun-Lim Choi
Tae-Hyung Kim
Jin-A Lee
Hyong Kyu Kim
Hyoung Kim
Deok-Jin Jang
Jennifer J Lee
Sunghoon Lee
Gwang Sik Sin
Chang-Bae Kim
Yutaka Suzuki
Sumio Sugano
Tai Kubo
Leonid L Moroz
Eric R Kandel
Jong Bhak
Bong-Kiun Kaang
Seoul National University · KRColumbia University · USNational Institute of Advanced Industrial Science and Technology · JPSangmyung University · KRThe University of Tokyo · JPTokyo University of Science · JPUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The marine mollusk Aplysia is a useful model organism for studying the cellular bases of behavior and plasticity. However, molecular studies of Aplysia have been limited by the lack of genomic information. Recently, a large scale characterization of neuronal transcripts was performed in A. californica. Here, we report the analysis of a parallel set of neuronal transcripts from a closely related species A. kurodai found in the northwestern Pacific. We collected 4,859 nonredundant sequences from the nervous system tissue of A. kurodai. By performing microarray and real-time PCR analyses, we found that ApC/EBP, matrilin, antistasin, and eIF3e clones were significantly up-regulated and a BAT1 homologous clone was significantly down-regulated by 5-HT treatment. Among these, we further demonstrated that the Ap-eIF3e plays a key role in 5-HT-induced long-term facilitation (LTF) as a positive regulator.

Indexed as

Neuronal PlasticityAnimalsAplysiaBase SequenceDNA PrimersExpressed Sequence TagsLong-Term PotentiationPolymerase Chain ReactionRNA, MessengerSerotoninDNA PrimersRNA, MessengerSerotonin

Identifiers

PMID19017802
PMCPMC2587617
OpenAlexW2082386102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.