Evidence map›Paper›PMID 19014414›Full record

ArticleEpigenetics & chromatin2008

The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9.

Kristina M Smith, Gregory O Kothe, Cindy B Matsen, Tamir K Khlafallah, Keyur K Adhvaryu, Melissa Hemphill, Michael Freitag, Mohammad R Motamedi, Eric U Selker

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
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  5. Systematic characterization ofFrontiers in microbiology · 2023
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  11. Genome-wide mapping of histone modifications during axenic growth in two species of Leptosphaeria maculans showing contrasting genomic organization.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
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  12. Article
  13. IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  14. Article
  15. Review
  16. How DoesFrontiers in microbiology · 2019
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  18. Review
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  20. Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kristina M Smith *Institute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Gregory O Kothe *Institute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Cindy B MatsenInstitute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Tamir K KhlafallahInstitute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Keyur K AdhvaryuInstitute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Melissa HemphillInstitute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Michael FreitagInstitute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
Mohammad R MotamediDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.
Eric U SelkerInstitute of Molecular Biology and Department of Biology, University of Oregon, Eugene, OR 97403, USA.
University of Oregon · USHarvard University · US

Funding

MECHANISM OF ACTION OF YEAST SILENCING COMPLEXESR01GM061641 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MOAZED, DANESH · 2000 to 2014
$3.9M
NIGMS NIH HHS R01 GM061641
6 · The paper itself

Abstract

backgroundSilencing of genes inserted near telomeres provides a model to investigate the function of heterochromatin. We initiated a study of telomeric silencing in Neurospora crassa, a fungus that sports DNA methylation, unlike most other organisms in which telomeric silencing has been characterized.

resultsThe selectable marker, hph, was inserted at the subtelomere of Linkage Group VR in an nst-1 (neurospora sir two-1) mutant and was silenced when nst-1 function was restored. We show that NST-1 is an H4-specific histone deacetylase. A second marker, bar, tested at two other subtelomeres, was similarly sensitive to nst-1 function. Mutation of three additional SIR2 homologues, nst-2, nst-3 and nst-5, partially relieved silencing. Two genes showed stronger effects: dim-5, which encodes a histone H3 K9 methyltransferase and hpo, which encodes heterochromatin protein-1. Subtelomeres showed variable, but generally low, levels of DNA methylation. Elimination of DNA methylation caused partial derepression of one telomeric marker. Characterization of histone modifications at subtelomeric regions revealed H3 trimethyl-K9, H3 trimethyl-K27, and H4 trimethyl-K20 enrichment. These modifications were slightly reduced when telomeric silencing was compromised. In contrast, acetylation of histones H3 and H4 increased.

conclusionWe demonstrate the presence of telomeric silencing in Neurospora and show a dependence on histone deacetylases and methylation of histone H3 lysine 9. Our studies also reveal silencing functions for DIM-5 and HP1 that appear independent of their role in de novo DNA methylation.

Identifiers

PMID19014414
PMCPMC2596135
OpenAlexW2148074890

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.