Evidence map›Paper›PMID 19011221›Full record

ArticleBlood2009

SCL and associated proteins distinguish active from repressive GATA transcription factor complexes.

Tamara Tripic, Wulan Deng, Yong Cheng, Ying Zhang, Christopher R Vakoc, Gregory D Gregory, Ross C Hardison, Gerd A Blobel

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 173 citations in OpenAlex.

  1. Article
  2. Mechanisms of Globin Gene Regulation in Mammals.Annual review of genetics · 2025
    Review
  3. Review
  4. Article
  5. LDB1 establishes multi-enhancer networks to regulate gene expression.bioRxiv : the preprint server for biology · 2024
    Article
  6. Transcription Factor TAL1 in Erythropoiesis.Advances in experimental medicine and biology · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Enhancer-gene specificity in development and disease.Development (Cambridge, England) · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. New Insights Into the Differentiation of Megakaryocytes From Hematopoietic Progenitors.Arteriosclerosis, thrombosis, and vascular biology · 2019
    Review

57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Tamara TripicDivision of Hematology, The Children's Hospital of Philadelphia, PA 19104, USA.
Wulan Deng
Yong Cheng
Ying Zhang
Christopher R Vakoc
Gregory D Gregory
Ross C Hardison
Gerd A Blobel
Children's Hospital of Philadelphia · USPennsylvania State University · USUniversity of Pennsylvania · US

Funding

Transcriptional Networks Controlling Erythroid DifferentiationR01DK054937 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Gerd A Blobel · 1999 to 2026
$12.8M
RED CELL HEMOGLOBIN RESEARCH TRAINING PROGRAMT32HL007150 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI STELLA T CHOU, Mortimer Poncz · 1985 to 2026
$7.4M
Global Predictions and Tests of Erythroid RegulationR01DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BLOBEL, GERD A, CHIAROMONTE, FRANCESCA · 2004 to 2013
$5.3M
Global Predictions and Tests of Hematopoietic RegulationR56DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2014 to 2014
$224k
NHLBI NIH HHS T32 HL007150NIDDK NIH HHS DK54937NIDDK NIH HHS DK65806NIDDK NIH HHS R01 DK054937NIDDK NIH HHS R01 DK065806NIDDK NIH HHS R56 DK065806
6 · The paper itself

Abstract

GATA-1 controls hematopoietic development by activating and repressing gene transcription, yet the in vivo mechanisms that specify these opposite activities are unknown. By examining the composition of GATA-1-associated protein complexes in a conditional erythroid rescue system as well as through the use of tiling arrays we detected the SCL/TAL1, LMO2, Ldb1, E2A complex at all positively acting GATA-1-bound elements examined. Similarly, the SCL complex is present at all activating GATA elements in megakaryocytes and mast cells. In striking contrast, at sites where GATA-1 functions as a repressor, the SCL complex is depleted. A DNA-binding defective form of SCL maintains association with a subset of active GATA elements indicating that GATA-1 is a key determinant for SCL recruitment. Knockdown of LMO2 selectively impairs activation but not repression by GATA-1. ETO-2, an SCL-associated protein with the potential for transcription repression, is also absent from GATA-1-repressed genes but, unlike SCL, fails to accumulate at GATA-1-activated genes. Together, these studies identify the SCL complex as a critical and consistent determinant of positive GATA-1 activity in multiple GATA-1-regulated hematopoietic cell lineages.

Indexed as

Gene Expression RegulationAdaptor Proteins, Signal TransducingAnimalsBasic Helix-Loop-Helix ProteinsBlood CellsDNA-Binding ProteinsGATA1 Transcription FactorImmunoprecipitationLIM Domain ProteinsMetalloproteinsMiceOligonucleotide Array Sequence AnalysisProto-Oncogene ProteinsT-Cell Acute Lymphocytic Leukemia Protein 1Transcription, GeneticAdaptor Proteins, Signal TransducingBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsGata1 protein, mouseGATA1 Transcription FactorLIM Domain ProteinsLmo2 protein, mouseMetalloproteinsProto-Oncogene ProteinsTal1 protein, mouseT-Cell Acute Lymphocytic Leukemia Protein 1

Identifiers

PMID19011221
PMCPMC2652367
OpenAlexW1970056549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.