Evidence map›Paper›PMID 19011070›Full record

ArticleApplied and environmental microbiology2009

Complete fermentation of xylose and methylglucuronoxylose derived from methylglucuronoxylan by Enterobacter asburiae strain JDR-1.

Changhao Bi, John D Rice, James F Preston

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Diversity of microbiota found in coffee processing wastewater treatment plant.World journal of microbiology & biotechnology · 2017
    Article
  4. Article
  5. Article
  6. Rewiring Lactococcus lactis for ethanol production.Applied and environmental microbiology · 2013
    Article
  7. Article
  8. Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Changhao BiUniversity of Florida, Department of Microbiology and Cell Science, Gainesville, FL 32611-0700, USA.
John D Rice
James F Preston
University of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acid pretreatment is commonly used to release pentoses from the hemicellulose fraction of cellulosic biomass for bioconversion. The predominant pentose in the hemicellulose fraction of hardwoods and crop residues is xylose in the polysaccharide methylglucuronoxylan, in which as many as one in six of the beta-1,4-linked xylopyranose residues is substituted with alpha-1,2-linked 4-O-methylglucuronopyranose. Resistance of the alpha-1,2-methylglucuronosyl linkages to acid hydrolysis results in release of the aldobiuronate 4-O-methylglucuronoxylose, which is not fermented by bacterial biocatalysts currently used for bioconversion of hemicellulose. Enterobacter asburiae strain JDR-1, isolated from colonized hardwood (sweetgum), efficiently ferments both methylglucuronoxylose and xylose, producing predominantly ethanol and acetate. (13)C-nuclear magnetic resonance studies defined the Embden-Meyerhof pathway for metabolism of glucose and the pentose phosphate pathway for xylose metabolism. Rates of substrate utilization, product formation, and molar growth yields indicated methylglucuronoxylose is transported into the cell and hydrolyzed to release methanol, xylose, and hexauronate. Enterobacter asburiae strain JDR-1 is the first microorganism described that ferments methylglucuronoxylose generated along with xylose during the acid-mediated saccharification of hemicellulose. Genetic definition of the methylglucuronoxylose utilization pathway may allow metabolic engineering of established gram-negative bacterial biocatalysts for complete bioconversion of acid hydrolysates of methylglucuronoxylan. Alternatively, Enterobacter asburiae strain JDR-1 may be engineered for the efficient conversion of acid hydrolysates of hemicellulose to biofuels and chemical feedstocks.

Indexed as

FermentationAcetatesDNA, BacterialDNA, RibosomalEnterobacterEthanolGenes, rRNAGlucoseMetabolic Networks and PathwaysMethanolMolecular Sequence DataRNA, BacterialRNA, Ribosomal, 16SSequence Analysis, DNASequence Homology, Nucleic AcidWoodAcetatesDNA, BacterialDNA, RibosomalEthanolGlucoseMethanolRNA, BacterialRNA, Ribosomal, 16SXylose

Identifiers

PMID19011070
PMCPMC2620709
OpenAlexW2166311317

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.