Evidence map›Paper›PMID 19011015›Full record

ArticleInvestigative ophthalmology & visual science2009

Localization of a gene for keratoconus to a 5.6-Mb interval on 13q32.

Marzena Gajecka, Uppala Radhakrishna, Daniel Winters, Swapan K Nath, Malgorzata Rydzanicz, Uppala Ratnamala, Kimberly Ewing, Andrea Molinari, Jose A Pitarque, Kwanghyuk Lee and 2 more

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it, 114 citations in OpenAlex.

  1. Pooled it
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  5. Article
  6. Article
  7. Heritability of Corneal Parameters in Nuclear Families With Keratoconus.Translational vision science & technology · 2022
    Article
  8. Review
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  11. Review
  12. Article
  13. Review
  14. Article
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  16. Article
  17. Genomic strategies to understand causes of keratoconus.Molecular genetics and genomics : MGG · 2017
    Review
  18. Review
  19. Article
  20. Genetics in Keratoconus: where are we?Eye and vision (London, England) · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Marzena GajeckaBasic Medical Sciences Program, Washington, Wyoming, Alaska, Montana, and Idaho, Washington State University, Spokane, Washington 99210-1495, USA.
Uppala Radhakrishna
Daniel Winters
Swapan K Nath
Malgorzata Rydzanicz
Uppala Ratnamala
Kimberly Ewing
Andrea Molinari
Jose A Pitarque
Kwanghyuk Lee
Suzanne M Leal
Bassem A Bejjani
Washington State University Spokane · USBaylor College of Medicine · USCreighton University · USHospital Metropolitano · ECOklahoma Medical Research Foundation · USProvidence Sacred Heart Medical Center · US

Funding

Identification of Nonsyndromic Hearing Impairment GenesR01DC003594 · NIDCD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SUZANNE M LEAL · 2004 to 2026
$7.7M
Mapping and cloning genes for KeratoconusR01EY015428 · NEI · WASHINGTON STATE UNIVERSITY · PI BEJJANI, BASSEM A · 2004 to 2007
$1.3M
PHENOTYPES AND GENETIC ANALYSIS OF COMPLEX TRAITSR13MH059864 · NIMH · ROCKEFELLER UNIVERSITY · PI LEAL, SUZANNE MARGARET · 1999 to 1999
–
NEI NIH HHS 1R01 EY015428NEI NIH HHS R01 EY015428NIDCD NIH HHS R01 DC003594NIMH NIH HHS R13 MH059864
6 · The paper itself

Abstract

purposeKeratoconus (KTCN) is a noninflammatory thinning and anterior protrusion of the cornea that results in steepening and distortion of the cornea, altered refractive powers, and reduced visual acuity. Several loci responsible for a familial form of KTCN have been mapped, however; no mutations in any genes have been identified for any of these loci. There is also evidence that VSX1 and SOD1 may be involved in the etiology of KTCN. The purpose of this study was to verify the available data and to identify a new keratoconus susceptibility locus.

methodsKTCN without other ocular or systemic features was diagnosed in 18 families. VSX1 and SOD1 sequencing was performed on affected individuals and control subjects. Genomewide linkage analysis was then performed in all families using polymorphic microsatellite markers with an average spacing of 5 cM. Next, single-nucleotide polymorphism (SNP) arrays, fluorescence in situ hybridization (FISH) analysis, and a comparative genomic hybridization array were used in one family to assess a candidate region on 13q32.

resultsAll previously reported KTCN loci were excluded. VSX1 and SOD1 were sequenced, and no potentially functional variants were found. One KTCN family yielded a maximum multipoint parametric LOD score of 4.1 and multipoint nonparametric linkage (NPL) LOD score of 3.2. Multipoint linkage and haplotype analysis narrowed the locus to a 5.6-Mb region between the SNPs rs9516572 and rs3825523 on 13q32.

conclusionsThe results exclude VSX1 and SOD1 as potential disease-causing genes in these families and localize a novel gene for keratoconus to a 5.6-Mb interval on 13q32.

Indexed as

Genetic LinkageChromosome MappingChromosomes, Human, Pair 13Eye ProteinsFemaleGenesGenotypeHomeodomain ProteinsHumansIn Situ Hybridization, FluorescenceKeratoconusLod ScoreMaleMicrosatellite RepeatsMiddle AgedNucleic Acid HybridizationEye ProteinsHomeodomain ProteinsSOD1 protein, humanSuperoxide DismutaseSuperoxide Dismutase-1VSX1 protein, human

Identifiers

PMID19011015
PMCPMC4547351
OpenAlexW1992987620

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.