ArticleBioinformatics (Oxford, England)2009
The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays.
Article in Bioinformatics (Oxford, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- A Pooling Genome-Wide Association Study Identifies Susceptibility Loci and Signaling Pathways of Immune Thrombocytopenia in Chinese Han Population.International journal of genomics · 2020Article
- Genetics of acute rejection after kidney transplantation.Transplant international : official journal of the European Society for Organ Transplantation · 2018Review
- Explorative results from multistep screening for potential genetic risk loci of Alzheimer's disease in the longitudinal VITA study cohort.Journal of neural transmission (Vienna, Austria : 1996) · 2018Article
- The Potential Mutation of GAK Gene in the Typical Sporadic Parkinson's Disease from the Han Population of Chinese Mainland.Molecular neurobiology · 2016Article
- A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.Molecular neurobiology · 2016Article
- Article
- Tissue-specific patterns of allelically-skewed DNA methylation.Epigenetics · 2016Article
- A Pooled Genome-Wide Association Study of Asperger Syndrome.PloS one · 2015Article
- Genetic Variants Underlying Risk of Intracranial Aneurysms: Insights from a GWAS in Portugal.PloS one · 2015Article
- Article
- UPDG: utilities package for data analysis of pooled DNA GWAS.BMC genetics · 2012Article
- Common variants in DGKK are strongly associated with risk of hypospadias.Nature genetics · 2011Article
- Scanning for genomic regions subject to selective sweeps using SNP-MaP strategy.Genomics, proteomics & bioinformatics · 2010Article
- A three-stage genome-wide association study of general cognitive ability: hunting the small effects.Behavior genetics · 2010Article
- Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays.BMC research notes · 2010Article
- A genome-wide association study identifies multiple loci associated with mathematics ability and disability.Genes, brain, and behavior · 2010Article
- Allelic skewing of DNA methylation is widespread across the genome.American journal of human genetics · 2010Article
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3 authors.
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Abstract
summaryLarge-scale genome-wide association (GWA) studies using thousands of high-density SNP microarrays are becoming an essential tool in the search for loci related to heritable variation in many phenotypes. However, the cost of GWA remains beyond the reach of many researchers. Fortunately, the majority of statistical power can still be obtained by estimating allele frequencies from DNA pools, reducing the cost to that of tens, rather than thousands of arrays. We present a set of software tools for processing SNPMaP (SNP microarrays and pooling) data from CEL files to Relative Allele Scores in the rich R statistical computing environment.
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