Evidence map›Paper›PMID 19008224›Full record

ArticleThe Journal of biological chemistry2009

Calcium-dependent binding of HCN1 channel protein to hair cell stereociliary tip link protein protocadherin 15 CD3.

Neeliyath A Ramakrishnan, Marian J Drescher, Roberto L Barretto, Kirk W Beisel, James S Hatfield, Dennis G Drescher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Molecular Structure of the Hair Cell Mechanoelectrical Transduction Complex.Cold Spring Harbor perspectives in medicine · 2019
    Review
  3. Article
  4. Article
  5. Are TMCs the Mechanotransduction Channels of Vertebrate Hair Cells?The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Tip links in hair cells: molecular composition and role in hearing loss.Current opinion in otolaryngology & head and neck surgery · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Neeliyath A RamakrishnanDepartment of Otolaryngology, Wayne State University School of Medicine, Detroit, Michigan 48201.
Marian J DrescherDepartment of Otolaryngology, Wayne State University School of Medicine, Detroit, Michigan 48201. Electronic address: mdresche@med.wayne.edu.
Roberto L BarrettoDepartment of Otolaryngology, Wayne State University School of Medicine, Detroit, Michigan 48201.
Kirk W BeiselDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, Nebraska 68178.
James S HatfieldElectron Microscopy Laboratory, Veterans Affairs Medical Center, Detroit, Michigan 48201.
Dennis G DrescherDepartment of Otolaryngology, Wayne State University School of Medicine, Detroit, Michigan 48201; Departments of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan 48201.
Wayne State University · USCreighton University · USVeterans Health Administration · US

Funding

IDENTIFICATION OF ACOUSTICO-LATERALIS TRANSMITTERSR01DC000156 · NIDCD · WAYNE STATE UNIVERSITY · PI DRESCHER, DENNIS G · 1989 to 2013
$3.9M
ADENYLYL CYCLASE SIGNALING IN EAR SENSORY EPITHELIAR01DC004076 · NIDCD · WAYNE STATE UNIVERSITY · PI DRESCHER, MARIAN JEAN · 1999 to 2009
$1.8M
NIDCD NIH HHS DC 000156NIDCD NIH HHS DC 04076NIDCD NIH HHS R01 DC000156NIDCD NIH HHS R01 DC004076
6 · The paper itself

Abstract

The cytoplasmic amino terminus of HCN1, the primary full-length HCN isoform expressed in trout saccular hair cells, was found by yeast two-hybrid protocols to bind the cytoplasmic carboxyl-terminal domain of a protocadherin 15a-like protein. HCN1 was immunolocalized to discrete sites on saccular hair cell stereocilia, consistent with gradated distribution expected for tip link sites of protocadherin 15a. HCN1 message was also detected in cDNA libraries of rat cochlear inner and outer hair cells, and HCN1 protein was immunolocalized to cochlear hair cell stereocilia. As predicted by the trout hair cell model, the amino terminus of rat organ of Corti HCN1 was found by yeast two-hybrid analysis to bind the carboxyl terminus of protocadherin 15 CD3, a tip link protein implicated in mechanosensory transduction. Specific binding between HCN1 and protocadherin 15 CD3 was confirmed with pull-down assays and surface plasmon resonance analysis, both predicting dependence on Ca(2+). In the presence of calcium chelators, binding between HCN1 and protocadherin 15 CD3 was characterized by a K(D) = 2.39 x 10(-7) m. Ca(2+) at 26.5-68.0 microm promoted binding, with K(D) = 5.26 x 10(-8) m (at 61 microm Ca(2+)). Binding by deletion mutants of protocadherin 15 CD3 pointed to amino acids 158-179 (GenBank accession number XP_238200), with homology to the comparable region in trout hair cell protocadherin 15a-like protein, as necessary for binding to HCN1. Amino terminus binding of HCN1 to HCN1, hypothesized to underlie HCN1 channel formation, was also found to be Ca(2+)-dependent, although the binding was skewed toward a lower effective maximum [Ca(2+)] than for the HCN1 interaction with protocadherin 15 CD3. Competition may therefore exist in vivo between the two binding sites for HCN1, with binding of HCN1 to protocadherin 15 CD3 favored between 26.5 and 68 microm Ca(2+). Taken together, the evidence supports a role for HCN1 in mechanosensory transduction of inner ear hair cells.

Indexed as

Amino Acid SequenceAnimalsBase SequenceCadherinsCalciumCyclic Nucleotide-Gated Cation ChannelsDNAHair Cells, Auditory, InnerHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsImmunohistochemistryMolecular Sequence DataOrgan of CortiPotassium ChannelsProtein BindingRatsReverse Transcriptase Polymerase Chain ReactionCadherinsCalciumCyclic Nucleotide-Gated Cation ChannelsDNAHcn1 protein, ratHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsPotassium Channels

Identifiers

PMID19008224
PMCPMC2631981
OpenAlexW2013906012

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.