ArticleFunctional & integrative genomics2009
Integrating genes and phenotype: a wheat-Arabidopsis-rice glycosyltransferase database for candidate gene analyses.
Article in Functional & integrative genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed, 28 citations in OpenAlex.
- Genome-wide association studies for yield-related traits in soft red winter wheat grown in Virginia.PloS one · 2019Article
- A comparison of the transcriptomes between diploid and autotetraploidPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019Article
- Cloning and characterization of a specific UDP-glycosyltransferase gene induced by DON and Fusarium graminearum.Plant cell reports · 2018Article
- Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement.Frontiers in plant science · 2018Review
- The Role of Microsatellites in Streptophyta Gene Evolution.Journal of molecular evolution · 2017Article
- Transcriptional analysis of late ripening stages of grapevine berry.BMC plant biology · 2011Article
- wDBTF: an integrated database resource for studying wheat transcription factor families.BMC genomics · 2010Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Glycosyltransferases (GTs) constitute a very large multi-gene superfamily, containing several thousand members identified in sequenced organisms especially in plants. GTs are key enzymes involved in various biological processes such as cell wall formation, storage polysaccharides biosynthesis, and glycosylation of various metabolites. GTs have been identified in rice (Oryza sativa) and Arabidopsis thaliana, but their precise function has been demonstrated biochemically for only a few. In this work we have established a repertoire of virtually all the wheat (Triticum aestivum) GT sequences, using the large publicly available banks of expressed sequences. Based on sequence similarity with Arabidopsis and rice GTs compiled in the carbohydrate active enzyme database (CAZY), we have identified and classified these wheat sequences. The results were used to feed a searchable database available on the web ( http://wwwappli.nantes.inra.fr:8180/GTIDB ) that can be used for initiating an exhaustive candidate gene survey in wheat applied to a particular biological process. This is illustrated through the identification of GT families which are expressed during cell wall formation in wheat grain maturation.
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Registered trials
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