Evidence map›Paper›PMID 19005681›Full record

ArticleMolecular genetics and genomics : MGG2009

Transcriptome analysis of the zebrafish mind bomb mutant.

Junmo Hwang, Hyung-Soo Kim, Ji-Woong Seok, Jun-Dae Kim, Soonil Koun, So-Young Park, Jinseok Lee, Hyang Sook Kim, Hyung-Seok Kim, Kil Soo Kim and 5 more

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. 6-Gingerol, a Major Constituent ofInternational journal of molecular sciences · 2021
    Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Aberrant expression of genes necessary for neuronal development and Notch signaling in an epileptic mind bomb zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2011
    Article
  7. Spontaneous seizures and altered gene expression in GABA signaling pathways in a mind bomb mutant zebrafish.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Junmo HwangSchool of Life Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.
Hyung-Soo Kim
Ji-Woong Seok
Jun-Dae Kim
Soonil Koun
So-Young Park
Jinseok Lee
Hyang Sook Kim
Hyung-Seok Kim
Kil Soo Kim
Kyu-Tae Chang
Zae Young Ryoo
San Ming Wang
Tae-Lin Huh
Sanggyu Lee
Kyungpook National University · KRKorea Research Institute of Bioscience and Biotechnology · KRKorea University · KRNorthwestern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mind bomb (Mib) facilitates Notch signaling pathway by promoting the endocytosis of Notch ligand. The zebrafish mib ( ta52b ) mutant has a defect in its ubiquitin ligase activity which is necessary to inhibit the neurogenesis, resulting in a neuronal hyperplasia. Several genes regulated in the mib ( ta52b ) mutant have been well established, however, there were relatively few reports about the transcriptome profile. To identify the genes differentially expressed in the mib ( ta52b ) mutant, genome-wide analysis was performed using serial analysis of gene expression. Three hundred and thirty-five transcripts were identified whose expressions were significantly altered in the mib ( ta52b ) mutant as compared with the wild-type. Interestingly, it was suggested that the mib ( ta52b ) mutation may affect not only neurogenesis but also mesoderm development. These results provide new insights into Notch signaling pathway.

Indexed as

AnimalsBase SequenceDNA PrimersGene Expression ProfilingGene Expression Regulation, DevelopmentalGenome-Wide Association StudyIn Situ HybridizationMesodermMutationNeurogenesisOligonucleotide Array Sequence AnalysisReceptors, NotchSignal TransductionUbiquitin-Protein LigasesZebrafishZebrafish ProteinsDNA Primersmib1 protein, zebrafishReceptors, NotchUbiquitin-Protein LigasesZebrafish Proteins

Identifiers

PMID19005681
OpenAlexW2044683928

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.