Evidence map›Paper›PMID 19005673›Full record

ArticleChromosoma2009

ATRX marks the inactive X chromosome (Xi) in somatic cells and during imprinted X chromosome inactivation in trophoblast stem cells.

Claudia Baumann, Rabindranath De La Fuente

Open access · greenAbstract read
In one paragraph

Article in Chromosoma, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. ATRX: From Chromatin Remodeling to Disease.Genesis (New York, N.Y. : 2000) · 2025
    Review
  3. Article
  4. Article
  5. Multiple Roles of dXNP and dADD1-International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Advances in understanding chromosome silencing by the long non-coding RNA Xist.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  15. Review
  16. New and Xisting regulatory mechanisms of X chromosome inactivation.Current opinion in genetics & development · 2012
    Review
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Claudia BaumannDepartment of Clinical Studies, Center for Animal Transgenesis and Germ Cell Research, University of Pennsylvania, New Bolton Center, Kennett Square, PA, 19348, USA.
Rabindranath De La Fuente
California University of Pennsylvania · USGenesis HealthCare · US

Funding

Epigenetic Control of Heterochromatin FormationR01HD042740 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI DE LA FUENTE, RABINDRANATH · 2004 to 2010
$1.6M
Role of the DNA Helicase LSH in female meiosisR56HD093383 · NICHD · UNIVERSITY OF GEORGIA · PI DE LA FUENTE, RABINDRANATH · 2018 to 2018
$300k
NICHD NIH HHS HD042740NICHD NIH HHS R01 HD042740NICHD NIH HHS R56 HD093383
6 · The paper itself

Abstract

Mammalian X chromosome inactivation (XCI) is an essential mechanism to compensate for dosage imbalances between male and female embryos. Although the molecular pathways are not fully understood, heterochromatinization of the Xi requires the coordinate recruitment of multiple epigenetic marks. Using fluorescence in situ hybridization analysis combined with immunocytochemistry, we demonstrate that the chromatin remodeling protein ATRX decorates the chromatids of a single, late replicating X chromosome in female somatic cells and co-localizes with the bona fide marker of the Xi, macroH2A1.2. Chromatin immunoprecipitation using somatic, embryonic stem (ES) cells and trophoblast stem (TS) cells as model for random and imprinted XCI, respectively, revealed that, in somatic and TS cells, ATRX exhibits a specific association with sequences located within the previously described H3K9me2-hotspot, a region 5' to the X inactive-specific transcript (Xist) locus. While no ATRX-Xi interaction was detectable in undifferentiated ES cells, an enrichment of ATRX was observed after 8 days of differentiation, indicating that ATRX associates with the Xi following the onset of random XCI, consistent with a potential role in maintenance of XCI. These results have important implications regarding a previously described escape from imprinted XCI in ATRX-deficient mice as well as cases of skewed XCI in patients with ATRX syndrome.

Indexed as

X Chromosome InactivationAnimalsCell DifferentiationCells, CulturedChromatin ImmunoprecipitationChromosomes, Human, XDNA HelicasesEmbryonic Stem CellsFemaleGenomic ImprintingHumansImmunohistochemistryIn Situ Hybridization, FluorescenceMaleMiceMice, KnockoutATRX protein, humanAtrx protein, mouseDNA HelicasesNuclear ProteinsRNA, Long NoncodingRNA, UntranslatedXIST non-coding RNAX-linked Nuclear Protein

Identifiers

PMID19005673
PMCPMC2877807
OpenAlexW1993177659

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.