Evidence map›Paper›PMID 19004950›Full record

ArticleJournal of virology2009

A single amino acid substitution in a segment of the CA protein within Gag that has similarity to human immunodeficiency virus type 1 blocks infectivity of a human endogenous retrovirus K provirus in the human genome.

David J Heslin, Pablo Murcia, Frederick Arnaud, Koenraad Van Doorslaer, Massimo Palmarini, Jack Lenz

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Downregulation of Human Endogenous Retrovirus Type K (HERV-K) ViralClinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
  5. Article
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  7. HERV-K HML-2 diversity among humans.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Article
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  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

David J HeslinDepartment of Molecular Genetics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Pablo Murcia
Frederick Arnaud
Koenraad Van Doorslaer
Massimo Palmarini
Jack Lenz
University of Glasgow · GBAlbert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
LEUKEMOGENESIS BY MURINE RETROVIRUSESR01CA044822 · NCI · YESHIVA UNIVERSITY · PI LENZ, JACK R. · 1987 to 2006
$2.4M
GENETICS AND BIOCHEMISTRY OF CELLULAR REGULATIONT32GM007128 · NIGMS · YESHIVA UNIVERSITY · PI STANLEY, PAMELA M · 1985 to 1996
–
NCI NIH HHS CA013330NCI NIH HHS CA044822NCI NIH HHS P30 CA013330NCI NIH HHS R01 CA044822NIGMS NIH HHS GM07128Wellcome Trust
6 · The paper itself

Abstract

Human endogenous retrovirus K (HERV-K) is the most intact retrovirus in the human genome. However, no single HERV-K provirus in the human genome today appears to be infectious. Since the Gag protein is the central component for the production of retrovirus particles, we investigated the abilities of Gag from two HERV-K proviruses to support production of virus-like particles and viral infectivity. HERV-K113 has full-length open reading frames for all viral proteins, while HERV-K101 has a full-length gag open reading frame and is expressed in human male germ cell tumors. The Gag of HERV-K101 allowed production of viral particles and infectivity, although at lower levels than observed with a consensus sequence Gag. Thus, including HERV-K109, at least two HERV-K proviruses in human genome today have functional Gag proteins. In contrast, HERV-K113 Gag supported only very low levels of particle production, and no infectivity was detectable due to a single amino acid substitution (I516M) near the extreme C terminus of the CA protein within Gag. The sequence of this portion of HERV-K CA showed similarities to that of human immunodeficiency virus type 1 and other primate immunodeficiency viruses. The extreme C terminus of CA may be a general determinant of retrovirus particle production. In addition, precise mapping of the defects in HERV-K proviruses as was done here identifies the key polymorphisms that need to be analyzed to assess the possible existence of infectious HERV-K alleles within the human population.

Indexed as

Mutation, MissenseVirus ReplicationAmino Acid SubstitutionCell Line, TumorEndogenous RetrovirusesGene OrderGene Products, gagGenetic Complementation TestHumansProvirusesSequence Analysis, DNAGene Products, gag

Identifiers

PMID19004950
PMCPMC2612375
OpenAlexW2157306326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.