Evidence map›Paper›PMID 19004874›Full record

ArticleNucleic acids research2008

Functional characterization of alternatively spliced human SECISBP2 transcript variants.

Laura V Papp, Junning Wang, Derek Kennedy, Didier Boucher, Yan Zhang, Vadim N Gladyshev, Ravindra N Singh, Kum Kum Khanna

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  10. Diverse role of survival motor neuron protein.Biochimica et biophysica acta. Gene regulatory mechanisms · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Laura V PappSignal Transduction Laboratory, Queensland Institute of Medical Research, Herston, Queensland, Australia. Laurap@qimr.edu.au
Junning Wang
Derek Kennedy
Didier Boucher
Yan Zhang
Vadim N Gladyshev
Ravindra N Singh
Kum Kum Khanna
University of Massachusetts Chan Medical School · USGriffith University · AUQIMR Berghofer Medical Research Institute · AUUniversity of Nebraska–Lincoln · US

Funding

Splicing Regulation of Spinal Muscular Atrophy GenesR01NS055925 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SINGH, RAVINDRA N · 2006 to 2023
$5.6M
Targeting a novel silencer to correct SMN2 splicing in Spinal Muscular AtrophyR21NS055149 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SINGH, RAVINDRA N · 2006 to 2007
$396k
NINDS NIH HHS R01NS055925NINDS NIH HHS R21NS055149
6 · The paper itself

Abstract

Synthesis of selenoproteins depends on decoding of the UGA stop codon as the amino acid selenocysteine (Sec). This process requires the presence of a Sec insertion sequence element (SECIS) in the 3'-untranslated region of selenoprotein mRNAs and its interaction with the SECIS binding protein 2 (SBP2). In humans, mutations in the SBP2-encoding gene Sec insertion sequence binding protein 2 (SECISBP2) that alter the amino acid sequence or cause splicing defects lead to abnormal thyroid hormone metabolism. Herein, we present the first in silico and in vivo functional characterization of alternative splicing of SECISBP2. We report a complex splicing pattern in the 5'-region of human SECISBP2, wherein at least eight splice variants encode five isoforms with varying N-terminal sequence. One of the isoforms, mtSBP2, contains a mitochondrial targeting sequence and localizes to mitochondria. Using a minigene-based in vivo splicing assay we characterized the splicing efficiency of several alternative transcripts, and show that the splicing event that creates mtSBP2 can be modulated by antisense oligonucleotides. Moreover, we show that full-length SBP2 and some alternatively spliced variants are subject to a coordinated transcriptional and translational regulation in response to ultraviolet type A irradiation-induced stress. Overall, our data broadens the functional scope of a housekeeping protein essential to selenium metabolism.

Indexed as

Alternative SplicingCell LineEvolution, MolecularGene Expression RegulationHumansMitochondrial ProteinsOligonucleotides, AntisenseOpen Reading FramesProtein BiosynthesisProtein IsoformsRNA-Binding ProteinsTranscription, GeneticUltraviolet RaysMitochondrial ProteinsOligonucleotides, AntisenseProtein IsoformsRNA-Binding ProteinsSECISBP2 protein, human

Identifiers

PMID19004874
PMCPMC2602786
OpenAlexW1979528194

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.