Evidence map›Paper›PMID 19001295›Full record

ArticleGenetics2009

High nucleotide divergence in developmental regulatory genes contrasts with the structural elements of olfactory pathways in caenorhabditis.

Richard Jovelin, Joseph P Dunham, Frances S Sung, Patrick C Phillips

Abstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
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  4. Genetic diversity estimates for themicroPublication biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Richard JovelinCenter for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403-5289, USA.
Joseph P Dunham
Frances S Sung
Patrick C Phillips

Funding

QUANITITATIVE TRAIT LOCI FOR CHEMOSENSATIONR01GM054185 · NIGMS · UNIVERSITY OF TEXAS ARLINGTON · PI PHILLIPS, PATRICK C. · 1998 to 2002
$452k
Natural variation in aging: building upon the nematode model systemR03AG029377 · NIA · UNIVERSITY OF OREGON · PI PHILLIPS, PATRICK C. · 2007 to 2008
$112k
NIA NIH HHS AG029377NIA NIH HHS R03 AG029377NIGMS NIH HHS GM54185
6 · The paper itself

Abstract

Almost all organismal function is controlled by pathways composed of interacting genetic components. The relationship between pathway structure and the evolution of individual pathway components is not completely understood. For the nematode Caenorhabditis elegans, chemosensory pathways regulate critical aspects of an individual's life history and development. To help understand how olfaction evolves in Caenorhabditis and to examine patterns of gene evolution within transduction pathways in general, we analyzed nucleotide variation within and between species across two well-characterized olfactory pathways, including regulatory genes controlling the fate of the cells in which the pathways are expressed. In agreement with previous studies, we found much higher levels of polymorphism within C. remanei than within the related species C. elegans and C. briggsae. There are significant differences in the rates of nucleotide evolution for genes across the two pathways but no particular association between evolutionary rate and gene position, suggesting that the evolution of functional pathways must be considered within the context of broader gene network structure. However, developmental regulatory genes show both higher levels of divergence and polymorphism than the structural genes of the pathway. These results show that, contrary to the emerging paradigm in the evolution of development, important structural changes can accumulate in transcription factors.

Indexed as

Genes, HelminthGenetic VariationAnimalsCaenorhabditis elegansEvolution, MolecularGene DuplicationGenes, DevelopmentalGenetic SpeciationModels, BiologicalMolecular Sequence DataOlfactory PathwaysPolymorphism, GeneticSequence HomologySpecies Specificity

Identifiers

PMID19001295
PMCPMC2666507

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.