Evidence map›Paper›PMID 19000724›Full record

ArticleVirus research2009

Human adenovirus type 19: genomic and bioinformatics analysis of a keratoconjunctivitis isolate.

Christopher M Robinson, Fatemeh Shariati, Jeremy Zaitshik, Allison F Gillaspy, David W Dyer, James Chodosh

Abstract read
In one paragraph

Article in Virus research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Temporal dynamics of Human mastadenovirus species in cases of respiratory illness in southern Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Ultrastructure of adenovirus keratitis.Investigative ophthalmology & visual science · 2015
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Molecular evolution of human species D adenoviruses.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Christopher M RobinsonThe Molecular Pathogenesis of Eye Infection Research Center, Dean A. McGee Eye Institute, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States.
Fatemeh Shariati
Jeremy Zaitshik
Allison F Gillaspy
David W Dyer
James Chodosh
Dean McGee Eye Institute · USUniversity of Oklahoma Health Sciences Center · US

Funding

UNDERSTANDING THE ROLE OF RETINOL DEHYDROGENASES RDH11 AND RDH12 IN VISIONP20RR017703 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ASH, JOHN D · 2002 to 2011
$23.6M
USE OF 16S RIBOSOMAL DNA SEQUENCING TO EVALUATE NGUP20RR015564 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI GILLASPY, ALLISON · 2000 to 2009
$18.5M
Immunopathogenesis of Adenovirus KeratitisR01EY013124 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI James Chodosh, Jaya Rajaiya · 2001 to 2026
$10.8M
CORE--MOLECULAR BIOLOGYP30EY012190 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ANDERSON, ROBERT E · 1999 to 2009
$5.2M
Molecular Basis of Immunity - Kirschtein-NRSAT32AI007633 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CUNNINGHAM, MADELEINE W. · 2001 to 2022
$4.0M
Genetics of Ocular AdenovirusesR03EY015222 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CHODOSH, JAMES · 2004 to 2006
$436k
NCRR NIH HHS P20 RR015564NCRR NIH HHS P20 RR017703NEI NIH HHS EY012190NEI NIH HHS EY013124NEI NIH HHS EY015222NEI NIH HHS P30 EY012190NEI NIH HHS R01 EY013124NEI NIH HHS R03 EY015222NIAID NIH HHS T32 AI007633PHS HHS T32 A1007633
6 · The paper itself

Abstract

Human adenovirus type 19 (HAdV-19) is a major etiologic agent of epidemic keratoconjunctivitis (EKC), a common and severe eye infection associated with long-term visual morbidity due to persistent corneal inflammation. Ironically, while the prototype strain of HAdV-19 does not cause eye infections, other isolates of the serotype have caused major outbreaks of EKC. Here we have sequenced a clinical isolate of HAdV-19 (HAdV-19 strain C) from a human patient with EKC. Global pairwise alignment of HAdV-19C to other HAdV species D serotypes identified areas of sequence divergence in the penton base (host cell internalization signal), hexon (principal viral capsid structural protein), E3 (site of immunomodulatory genes), and fiber (host cell-binding ligand) regions. Comparison of HAdV-19 strain C to the recently sequenced HAdV-37, another EKC causing serotype, identified sequence diversity in the penton base and hexon, but sequence conservation in the E3 and fiber regions. Elucidation of the HAdV-19C genome will facilitate future studies into the pathogenesis of EKC, and may shed light on the genetic determinants of corneal tropism.

Indexed as

Genome, ViralAdenoviruses, HumanAdenovirus Infections, HumanComputational BiologyDNA, ViralHumansKeratoconjunctivitisPhylogenySequence Analysis, DNADNA, Viral

Identifiers

PMID19000724
PMCPMC2637384
OpenAlexW2064938633

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.