ArticlePlant molecular biology2009
Genome-wide targeted prediction of ABA responsive genes in rice based on over-represented cis-motif in co-expressed genes.
Article in Plant molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- High-throughput quantitative assessment of ABA-responsive elements at single-nucleotide resolution.Quantitative biology (Beijing, China) · 2025Article
- Terpene synthases in cucumber (Cucumis sativus) and their contribution to herbivore-induced volatile terpenoid emission.The New phytologist · 2022Article
- Genome Wide Analysis of the Transcriptional Profiles in Different Regions of the Developing Rice Grains.Rice (New York, N.Y.) · 2020Article
- Article
- The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.The Plant cell · 2018Article
- Ectopic Expression of Rice PYL3 Enhances Cold and Drought Tolerance in Arabidopsis thaliana.Molecular biotechnology · 2018Article
- Comparative Study of Lectin Domains in Model Species: New Insights into Evolutionary Dynamics.International journal of molecular sciences · 2017Article
- Nitrogen Assimilation, Abiotic Stress and Glucose 6-Phosphate Dehydrogenase: The Full Circle of Reductants.Plants (Basel, Switzerland) · 2016Review
- Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition.PloS one · 2015Article
- Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining.Rice (New York, N.Y.) · 2015Article
- Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings.PLoS genetics · 2014Article
- RiceFREND: a platform for retrieving coexpressed gene networks in rice.Nucleic acids research · 2013Article
- Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis.BMC genomics · 2012Article
- Expression pattern of drought stress marker genes in soybean roots under two water deficit systems.Genetics and molecular biology · 2012Article
- Transcriptome analysis of rin mutant fruit and in silico analysis of promoters of differentially regulated genes provides insight into LeMADS-RIN-regulated ethylene-dependent as well as ethylene-independent aspects of ripening in tomato.Molecular genetics and genomics : MGG · 2012Article
- The genetic and physiological analysis of late-flowering phenotype of T-DNA insertion mutants of AtCAL1 and AtCAL2 in Arabidopsis.Molecular biology reports · 2012Article
- Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress.BMC plant biology · 2011Article
- Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid.BMC genomics · 2011Article
- Abscisic acid effects on activity and expression of barley (Hordeum vulgare) plastidial glucose-6-phosphate dehydrogenase.Journal of experimental botany · 2011Article
- Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis.BMC genomics · 2011Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Abscisic acid (ABA), the popular plant stress hormone, plays a key role in regulation of sub-set of stress responsive genes. These genes respond to ABA through specific transcription factors which bind to cis-regulatory elements present in their promoters. We discovered the ABA Responsive Element (ABRE) core (ACGT) containing CGMCACGTGB motif as over-represented motif among the promoters of ABA responsive co-expressed genes in rice. Targeted gene prediction strategy using this motif led to the identification of 402 protein coding genes potentially regulated by ABA-dependent molecular genetic network. RT-PCR analysis of arbitrarily chosen 45 genes from the predicted 402 genes confirmed 80% accuracy of our prediction. Plant Gene Ontology (GO) analysis of ABA responsive genes showed enrichment of signal transduction and stress related genes among diverse functional categories.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.