Evidence map›Paper›PMID 18996226›Full record

ArticleGene expression patterns : GEP2009

Expression profile of differentiating serotonin neurons derived from rhesus embryonic stem cells and comparison to adult serotonin neurons.

Cynthia L Bethea, Arubala P Reddy, Darlene Pedersen, Yukari Tokuyama

Open access · greenAbstract readComparative Study
In one paragraph

Article in Gene expression patterns : GEP, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Canonical and noncanonical Wnt signaling in neural stem/progenitor cells.Cellular and molecular life sciences : CMLS · 2015
    Review
  2. Review
  3. SPOCK3, a risk gene for adult ADHD and personality disorders.European archives of psychiatry and clinical neuroscience · 2014
    Article
  4. Homeobox genes in obsessive-compulsive disorder.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2012
    Article
  5. Article
  6. Functional characterization of rhesus embryonic stem cell-derived serotonin neurons.Experimental biology and medicine (Maywood, N.J.) · 2010
    Article
  7. Distinct transcriptomes define rostral and caudal serotonin neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2010
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Cynthia L BetheaDivision of Reproductive Sciences, Oregon National Primate Research Center, Beaverton, OR 97006, USA. betheac@ohsu.edu
Arubala P Reddy
Darlene Pedersen
Yukari Tokuyama
Oregon National Primate Research Center · US

Funding

YR 50 PROJ- ROBERTS PRIMATE ISLETP51RR000163 · NCRR · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI FRUH, KLAUS J · 1985 to 2011
$140.8M
VASOACTIVE FACTORS IN ART CYCLES AND OVARIAN HYPERSTIMULATION SYNDROMEU54HD018185 · NICHD · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI OJEDA, SERGIO R · 1999 to 2010
$13.8M
OVARIAN STEROID REGULATION OF SEROTONIN IN PRIMATESR01MH062677 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI BETHEA, CYNTHIA LOUISE · 2001 to 2010
$3.5M
REPRODUCTIVE STEROIDS AND EXPERIMENTAL STROKEK01RR000163 · NCRR · OREGON HEALTH AND SCIENCE UNIVERSITY · PI MURPHY, STEPHANIE J · 2000 to 2004
$479k
Rhesus Embryonic Stem Cell-Derived Serotonin NeuronsR21MH073564 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI BETHEA, CYNTHIA LOUISE · 2006 to 2007
$367k
REPRODUCTIVE BIOLOGY IN PRIMATES: CENTER FACILITIESP30HD018185 · NICHD · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI WOLF, DON P · 1985 to 1998
–
NCRR NIH HHS K01 RR000163NCRR NIH HHS P51 RR000163NCRR NIH HHS RR000163NICHD NIH HHS HD 18185NICHD NIH HHS P30 HD018185NICHD NIH HHS U54 HD018185NIMH NIH HHS MH62677NIMH NIH HHS MH7356NIMH NIH HHS R01 MH062677NIMH NIH HHS R21 MH073564
6 · The paper itself

Abstract

The rhesus monkey embryonic stem cell line 366.4 differentiates into serotonin neurons. We examined the genetic cascade during differentiation and compared ESC-derived serotonin neurons to adult monkey serotonin neurons. RNA was extracted from ESC colonies, embryoid bodies (EBs), neurospheres in selection (N1) and proliferation stages (N2), differentiated serotonin neurons (N3) and from laser captured (LC) serotonin neurons of spayed female macaques treated with placebo, estrogen (E), progesterone (P) or E+P. The RNA was labeled and hybridized to Rhesus Monkey Affymetrix Gene Chips (n=1 per stage and 2 per animal treatment). Gene expression was examined with GeneSifter software. 545 genes that were related to developmental processes showed a threefold or greater change between stages. TGFb, Wnt, VEGF and Hedgehog signaling pathways showed the highest percent of probe set changes during differentiation. Genes in the categories (a) homeobox binding and transcription factors, (b) growth factors and receptors, (c) brain and neural specific factors and (d) serotonin specific factors are reported. Pivotal genes were confirmed with quantitative RT-PCR. In the serotonin developmental cascade, FGFR2 was robustly expressed at each stage. GATA3 was robustly expressed in EBs. Sonic hedgehog (Shh), PTCH (Shh-R) and Fev1 transcription factor expression coincided with the induction of serotonin specific marker genes during N1-selection. A majority of the examined genes were expressed in adult serotonin neurons. However, in the ESC-derived neurons, there was significant over-representation of probe sets related to cell cycle, axon guidance & dorso-ventral axis formation. This analysis suggests that the 366.4 cell line possesses cues for serotonin differentiation at early stages of differentiation, but that ESC-derived serotonin neurons are still immature.

Indexed as

Gene Expression ProfilingAgingAnimalsCell DifferentiationCell LineEmbryonic Stem CellsEstradiolFemaleGene Expression RegulationMacaca mulattaMiceNeuronsOligonucleotide Array Sequence AnalysisProgesteroneSerotoninSignal TransductionEstradiolProgesteroneSerotonin

Identifiers

PMID18996226
PMCPMC2753257
OpenAlexW2073924397

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.