Evidence map›Paper›PMID 18992215›Full record

ArticleAnalytical biochemistry2009

Liquid chromatography-mass spectrometry to study chondroitin lyase action pattern.

Zhenqing Zhang, Youmie Park, Melissa M Kemp, Wenjing Zhao, A-Rang Im, David Shaya, Miroslaw Cygler, Yeong Shik Kim, Robert J Linhardt

Abstract read
In one paragraph

Article in Analytical biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  9. Analysis of glycosaminoglycans in stem cell glycomics.Methods in molecular biology (Clifton, N.J.) · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Zhenqing ZhangDepartments of Chemistry and Chemical Biology and Chemical and Biological Engineering, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY 12180, USA.
Youmie Park
Melissa M Kemp
Wenjing Zhao
A-Rang Im
David Shaya
Miroslaw Cygler
Yeong Shik Kim
Robert J Linhardt
Rensselaer Polytechnic Institute · USSeoul National University · KRMcGill University · CA

Funding

Synthetic Heparan Sulfate: Probing Biosynthesis to Prepare Defined DrugsR01HL062244 · NHLBI · UNIVERSITY OF IOWA · PI DEANGELIS, PAUL L, LINHARDT, ROBERT J · 2001 to 2016
$4.1M
SEQUENCING THE POLYSACCHARIDE COMPONENT OF PROTEOGLYCANSR01GM038060 · NIGMS · UNIVERSITY OF IOWA · PI LINHARDT, ROBERT J · 1988 to 2012
$2.8M
Heparin Glycan Microarray for ScreeningR41RR023764 · NCRR · SOLIDUS BIOSCIENCES, INC. · PI LINHARDT, ROBERT J · 2007 to 2008
$400k
NCRR NIH HHS R41 RR023764NHLBI NIH HHS R01 HL062244NIGMS NIH HHS R01 GM038060
6 · The paper itself

Abstract

Liquid chromatography-mass spectrometry was applied to determine the action pattern of different chondroitin lyases. Two commercial enzymes, chondroitinase ABC (Proteus vulgaris) and chondroitinase ACII (Arthrobacter aurescens), having action patterns previously determined by viscosimetry and gel electrophoresis were first examined. Next, the action patterns of recombinant lyases, chondroitinase ABC from Bacteroides thetaiotaomicron (expressed in Escherichia coli) and chondroitinase AC from Flavobacterium heparinum (expressed in its original host), were examined. Chondroitin sulfate A (CS-A, also known as chondroitin-4-sulfate) was used as the substrate for these four lyases. Aliquots taken at various time points were analyzed. The products of chondroitinase ABC (P. vulgaris) and chondroitinase AC (F. heparinum) contained unsaturated oligosaccharides of sizes ranging from disaccharide to decasaccharide, demonstrating that both are endolytic enzymes. The products afforded by chondroitinase ABC (B. thetaiotaomicron) and chondroitinase ACII (A. aurescens) contained primarily unsaturated disaccharide. These two exolytic enzymes showed different minor products, suggesting some subtle specificity differences between the actions of these two exolytic lyases on chondroitin sulfate A.

Indexed as

ArthrobacterBacteroidesChondroitin ABC LyaseChondroitin LyasesChromatography, LiquidElectrophoresis, Gel, Two-DimensionalEnzyme ActivationMass SpectrometryProteus vulgarisRecombinant ProteinsTime FactorsViscosityChondroitin ABC LyaseChondroitin LyasesRecombinant Proteins

Identifiers

PMID18992215
PMCPMC2636793
OpenAlexW2019238019

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.