Evidence map›Paper›PMID 18988739›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Setting the chaperonin timer: a two-stroke, two-speed, protein machine.

John P Grason, Jennifer S Gresham, George H Lorimer

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Temperature Regulates Stability, Ligand Binding (MgJournal of the American Chemical Society · 2022
    Article
  2. Article
  3. Article
  4. Article
  5. Measurement ofJournal of magnetic resonance (San Diego, Calif. : 1997) · 2017
    Article
  6. Review
  7. Article
  8. Intrinsic unfoldase/foldase activity of the chaperonin GroEL directly demonstrated using multinuclear relaxation-based NMR.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Substrate protein switches GroE chaperonins from asymmetric to symmetric cycling by catalyzing nucleotide exchange.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Crystal structure of a GroEL-ADP complex in the relaxed allosteric state at 2.7 Å resolution.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  15. Measuring how much work the chaperone GroEL can do.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Article
  17. The group II chaperonin Mm-Cpn binds and refolds human γD crystallin.Protein science : a publication of the Protein Society · 2011
    Article
  18. Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  19. Review
  20. Use of thallium to identify monovalent cation binding sites in GroEL.Acta crystallographica. Section F, Structural biology and crystallization communications · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

John P GrasonDepartment of Chemistry and Biochemistry, Center for Biological Structure and Organization, University of Maryland, College Park, MD 20742, USA.
Jennifer S Gresham
George H Lorimer

Funding

NIGMS NIH HHS 1R01GM06851-01
6 · The paper itself

Abstract

In a study of the timing mechanism of the chaperonin nanomachine we show that the hemicycle time (HCT) is determined by the mean residence time (MRT) of GroES on the cis ring of GroEL. In turn, this is governed by allosteric interactions within the trans ring of GroEL. Ligands that enhance the R (relaxed) state (residual ADP, the product of the previous hemicycle, and K(+)) extend the MRT and the HCT, whereas ligands that enhance the T (taut) state (unfolded substrate protein, SP) decrease the MRT and the HCT. In the absence of SP, the chaperonin machine idles in the resting state, but in the presence of SP it operates close to the speed limit, set by the rate of ATP hydrolysis by the cis ring. Thus, the conformational states of the trans ring largely control the speed of the complete chaperonin cycle.

Indexed as

Allosteric RegulationAdenosine TriphosphateChaperonin 10Chaperonin 60Fluorescence Resonance Energy TransferHydrolysisKineticsPotassiumProtein ConformationTime FactorsAdenosine TriphosphateChaperonin 10Chaperonin 60Potassium

Identifiers

PMID18988739
PMCPMC2580751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.