ArticleNucleic acids research2009
Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed, 16 citations in OpenAlex.
- Review
- Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes.BMC genomics · 2016Article
- DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites.Nucleic acids research · 2015Article
- Hammondia hammondi harbors functional orthologs of the host-modulating effectors GRA15 and ROP16 but is distinguished from Toxoplasma gondii by a unique transcriptional profile.Eukaryotic cell · 2014Article
- Efficient CRISPR-Cas9-mediated genome editing in Plasmodium falciparum.Nature methods · 2014Article
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.Bioinformatics (Oxford, England) · 2012Article
- Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update.Nucleic acids research · 2011Article
- Recent Progress in Functional Genomic Research in Plasmodium falciparum.Current genomics · 2010Article
- New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.Molecular microbiology · 2010Article
- Comparative fitness assessment of Anopheles stephensi transgenic lines receptive to site-specific integration.Insect molecular biology · 2010Article
- Generation, annotation, and analysis of ESTs from midgut tissue of adult female Anopheles stephensi mosquitoes.BMC genomics · 2009Article
- Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs.BMC genomics · 2009Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Full-Malaria/Parasites is a database for transcriptome studies of apicomplexa and other parasites, which is based on our original full-length cDNA sequences and physical cDNA clone resources. In this update, the database has been expanded to contain the shogun sequencing for the entire sequences of 14,818 non-redundant full-length cDNA clones from six apicomplexa parasites and 6.8 million of transcription start sites (TSS), both of which had been produced by novel protocols using the oligo-capping method and the Illumina GA sequencer. The former should be the ultimate data for exact annotation of the expressed genes, while the latter should be useful for ultra-deep expression analysis. Furthermore, we have launched Full-Arthropods, a full-length cDNA database for arthropods of medical importance. Full-Arthropods contains 50 343 one-pass sequences, 10 399 shotgun complete sequences and 22.4 million TSS tags in anopheles mosquitoes that transmit malaria, tsetse flies that transmit trypanosomiasis and dust mites that cause allergic dermatitis and bronchial asthma. By providing the largest integrated full-length cDNA data resources in the apicomplexa parasites as well as their vectors, Full-Malaria/Parasites and Full-Arthropods should help combat parasitic diseases. Full-Malaria/Parasites and Full-Arthropods are accessible from http://fullmal.hgc.jp/.
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