Evidence map›Paper›PMID 18986729›Full record

ArticleJournal of plant physiology2009

The aux1 gene of the Ri plasmid is sufficient to confer auxin autotrophy in tobacco BY-2 cells.

Keiichirou Nemoto, Masamitsu Hara, Shingo Goto, Kouji Kasai, Hikaru Seki, Masashi Suzuki, Atsuhiro Oka, Toshiya Muranaka, Yoshihiro Mano

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Article in Journal of plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Keiichirou NemotoGraduate School of Bioscience, Tokai University, 317 Nishino, Numazu, Shizuoka 410-0321, Japan.
Masamitsu Hara
Shingo Goto
Kouji Kasai
Hikaru Seki
Masashi Suzuki
Atsuhiro Oka
Toshiya Muranaka
Yoshihiro Mano
Tokai University · JPRIKEN Center for Sustainable Resource Science · JPKyoto Bunkyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tobacco (Nicotiana tabacum) Bright Yellow-2 (BY-2) cells are rapidly proliferating meristematic cells that require auxin for culture in vitro. We have established several transgenic BY-2 cell lines that carry the T-DNA of Agrobacterium rhizogenes 15834, which harbors an agropine-type root-inducing (Ri) plasmid. Two of these lines, BYHR-3 and BYHR-7, were used to test the role of auxin in the proliferation of plant cells. The lines grew rapidly in Linsmaier-Skoog (LS) medium lacking auxin and other phytohormones. The TR-DNA, containing the aux1 (tryptophan monooxygenase) and aux2 (indoleacetamide hydrolase) genes, was present in the genomes of both transgenic lines, whereas the TL-DNA, containing the rolA, B, C and D genes, was present in the genome of BYHR-7 but not BYHR-3. Since the introduction of the rolABCD genes alone did not affect the auxin requirement of BY-2 cells, the aux1 and aux2 genes, but not the rolABCD genes, appear to be relevant to the auxin autotrophy of these transgenic lines. Furthermore, the overexpression of aux1 allowed BY-2 cells to grow rapidly in the absence of auxin, suggesting the existence in plant cells of an unidentified gene whose product is functionally equivalent or similar to that of aux2 of the Ri plasmid.

Indexed as

Genes, PlantAutotrophic ProcessesCell LineCell ShapeCulture MediaDNA, BacterialDNA, PlantGene Expression Regulation, PlantGenome, PlantIndoleacetic AcidsMutagenesis, InsertionalNicotianaPlant ProteinsPlants, Genetically ModifiedPlasmidsReverse Transcriptase Polymerase Chain ReactionCulture MediaDNA, BacterialDNA, PlantIndoleacetic AcidsPlant ProteinsRNA, MessengerT-DNA

Identifiers

PMID18986729
OpenAlexW2088053304

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.