Evidence map›Paper›PMID 18986166›Full record

ArticleBiochemistry2008

Molecular bases for the recognition of short peptide substrates and cysteine-directed modifications of human insulin-degrading enzyme.

Enrico Malito, Luis A Ralat, Marika Manolopoulou, Julie L Tsay, Natasha L Wadlington, Wei-Jen Tang

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 82 citations in OpenAlex.

  1. Review
  2. The Structures and Functions of VZV Glycoproteins.Current topics in microbiology and immunology · 2023
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  4. Review
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  12. Lipopolysaccharide Potentiates Insulin-Driven Hypoglycemic Shock.Journal of immunology (Baltimore, Md. : 1950) · 2017
    Article
  13. Targeting Insulin-Degrading Enzyme to Treat Type 2 Diabetes Mellitus.Trends in endocrinology and metabolism: TEM · 2016
    Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Enrico MalitoBen-May Department for Cancer Research, Biological Science Collegiate Division, and Committee on Neurobiology, The University of Chicago, Chicago, Illinois 60637, USA.
Luis A Ralat
Marika Manolopoulou
Julie L Tsay
Natasha L Wadlington
Wei-Jen Tang
University of Chicago · US

Funding

Regulation and Catalysis of Human Insulin Degrading EnzymeR01GM081539 · NIGMS · UNIVERSITY OF CHICAGO · PI TANG, WEI-JEN · 2007 to 2015
$2.6M
NIGMS NIH HHS GM81539NIGMS NIH HHS R01 GM081539
6 · The paper itself

Abstract

Insulin degrading enzyme (IDE) utilizes a large catalytic chamber to selectively bind and degrade peptide substrates such as insulin and amyloid beta (Abeta). Tight interactions with substrates occur at an exosite located approximately 30 A away from the catalytic center that anchors the N-terminus of substrates to facilitate binding and subsequent cleavages at the catalytic site. However, IDE also degrades peptide substrates that are too short to occupy both the catalytic site and the exosite simultaneously. Here, we use kinins as a model system to address the kinetics and regulation of human IDE with short peptides. IDE specifically degrades bradykinin and kallidin at the Pro/Phe site. A 1.9 A crystal structure of bradykinin-bound IDE reveals the binding of bradykinin to the exosite and not to the catalytic site. In agreement with observed high K(m) values, this suggests low affinity of bradykinin for IDE. This structure also provides the molecular basis on how the binding of short peptides at the exosite could regulate substrate recognition. We also found that human IDE is potently inhibited by physiologically relevant concentrations of S-nitrosylation and oxidation agents. Cysteine-directed modifications play a key role, since an IDE mutant devoid of all 13 cysteines is insensitive to the inhibition by S-nitrosoglutathione, hydrogen peroxide, or N-ethylmaleimide. Specifically, cysteine 819 of human IDE is located inside the catalytic chamber pointing toward an extended hydrophobic pocket and is critical for the inactivation. Thiol-directed modification of this residue likely causes local structural perturbation to reduce substrate binding and catalysis.

Indexed as

AlkylationAmino Acid SubstitutionCatalytic DomainConserved SequenceCrystallography, X-RayCysteineEnzyme InhibitorsHumansInsulysinKallidinMaleimidesModels, MolecularOxidation-ReductionPeptidesProtein Processing, Post-TranslationalSubstrate SpecificityCysteineEnzyme InhibitorsInsulysinKallidinmaleimideMaleimidesPeptidesSulfhydryl Compounds

Identifiers

PMID18986166
PMCPMC2652632
OpenAlexW2021624791

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.