Evidence map›Paper›PMID 18985007›Full record

ArticleExperimental & molecular medicine2008

Gene expression profiling of light-induced retinal degeneration in phototransduction gene knockout mice.

Jayalakshmi Krishnan, Jiayan Chen, Kum Joo Shin, Jong Ik Hwang, Sang Uk Han, Gwang Lee, Sangdun Choi

Open access · goldAbstract read
In one paragraph

Article in Experimental & molecular medicine, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Jayalakshmi KrishnanDepartment of Molecular Science and Technology, Ajou University, Suwon 443-749, Korea.
Jiayan Chen
Kum Joo Shin
Jong Ik Hwang
Sang Uk Han
Gwang Lee
Sangdun Choi
Ajou University · KRCalifornia Institute of Technology · USKorea University · KRUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exposure to light can induce photoreceptor cell death and exacerbate retinal degeneration. In this study, mice with genetic knockout of several genes, including rhodopsin kinase (Rhok-/-), arrestin (Sag-/-), transducin (Gnat1-/-), c-Fos (c-Fos-/-) and arrestin/transducin (Sag-/-/Gnat1-/-), were examined. We measured the expression levels of thousands of genes in order to investigate their roles in phototransduction signaling in light-induced retinal degeneration using DNA microarray technology and then further explored the gene network using pathway analysis tools. Several cascades of gene components were induced or inhibited as a result of corresponding gene knockout under specific light conditions. Transducin deletion blocked the apoptotic signaling induced by exposure to low light conditions, and it did not require c-Fos/AP-1. Deletion of c-Fos blocked the apoptotic signaling induced by exposure to high intensity light. In the present study, we identified many gene transcripts that are essential for the initiation of light-induced rod degeneration and proposed several important networks that are involved in pro- and anti-apoptotic signaling. We also demonstrated the different cascades of gene components that participate in apoptotic signaling under specific light conditions.

Indexed as

Gene Expression ProfilingAnimalsApoptosisGenes, fosG-Protein-Coupled Receptor Kinase 1GTP-Binding Protein alpha SubunitsLightLight Signal TransductionMiceMice, KnockoutOligonucleotide Array Sequence AnalysisRetinaRetinal DegenerationTransducinGnat1 protein, mouseG-Protein-Coupled Receptor Kinase 1GTP-Binding Protein alpha SubunitsTransducin

Identifiers

PMID18985007
PMCPMC2679354
OpenAlexW2142200151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.