Evidence map›Paper›PMID 18984595›Full record

ArticleThe Journal of biological chemistry2009

Purification and characterization of the lipid A 1-phosphatase LpxE of Rhizobium leguminosarum.

Mark J Karbarz, David A Six, Christian R H Raetz

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. TheMicroorganisms · 2021
    Article
  2. International journal of molecular sciences · 2021
    Article
  3. Lipid A fromInternational journal of molecular sciences · 2020
    Article
  4. Article
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  6. Identification ofFrontiers in microbiology · 2017
    Article
  7. Article
  8. Kdo2 -lipid A: structural diversity and impact on immunopharmacology.Biological reviews of the Cambridge Philosophical Society · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Mark J KarbarzDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710.
David A SixDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710.
Christian R H RaetzDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710. Electronic address: raetz@biochem.duke.edu.
Duke University Hospital · USDuke University · US

Funding

LIPID A MODIFICATION SYSTEMS IN GRAM-NEGATIVE BACTERIAR37GM051796 · NIGMS · DUKE UNIVERSITY · PI RAETZ, CHRISTIAN R · 1999 to 2008
$3.0M
CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008558 · NIGMS · DUKE UNIVERSITY · PI PIRRUNG, MICHAEL C · 1994 to 2003
$1.2M
NIGMS NIH HHS GM-08558NIGMS NIH HHS R37-GM-51796
6 · The paper itself

Abstract

LpxE, a membrane-bound phosphatase found in Rhizobium leguminosarum and some other Gram-negative bacteria, selectively dephosphorylates the 1-position of lipid A on the outer surface of the inner membrane. LpxE belongs to the family of lipid phosphate phosphatases that contain a tripartite active site motif and six predicted transmembrane helices. Here we report the purification and characterization of R. leguminosarum LpxE. A modified lpxE gene, encoding a protein with an N-terminal His6 tag, was expressed in Escherichia coli. The protein was solubilized with Triton X-100 and purified to near-homogeneity. Gel electrophoresis reveals a molecular weight consistent with the predicted 31 kDa. LpxE activity is dependent upon Triton X-100, optimal near pH 6.5, and Mg2+-independent. The H197A and R133A substitutions inactivate LpxE, as does treatment with diethyl pyrocarbonate. In a mixed micelle assay system, the apparent Km for the precursor lipid IV(A) is 11 microm. Substrates containing the 3-deoxy-d-manno-oct-2-ulosonic acid disaccharide are dephosphorylated at similar rates to lipid IV(A), whereas glycerophospholipids like phosphatidic acid or phosphatidylglycerol phosphate are very poor substrates. However, an LpxE homologue present in Agrobacterium tumefaciens is selective for phosphatidylglycerol phosphate, demonstrating the importance of determining substrate specificity before assigning the functions of LpxE-related proteins. The availability of purified LpxE will facilitate the preparation of novel 1-dephosphorylated lipid A molecules that are not readily accessible by chemical methods.

Indexed as

Agrobacterium tumefaciensAmino Acid SubstitutionBacterial ProteinsEnzyme ActivationHydrogen-Ion ConcentrationKineticsLipid AMutation, MissensePhosphoric Monoester HydrolasesRecombinant ProteinsRhizobium leguminosarumSequence Homology, Amino AcidSpecies SpecificitySubstrate SpecificityBacterial ProteinsLipid Alipid A 1-phosphatase, Rhizobium leguminosarumPhosphoric Monoester HydrolasesRecombinant Proteins

Identifiers

PMID18984595
PMCPMC2610509
OpenAlexW2001302503

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.