ArticleGenetics2009
Population genetic inference from resequencing data.
Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
27 citing papers in PubMed.
- Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.Molecular genetics and genomics : MGG · 2017Article
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- Population genetic studies in the genomic sequencing era.Dong wu xue yan jiu = Zoological research · 2015Review
- Parameter-free methods distinguish Wnt pathway models and guide design of experiments.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Genome-wide estimation of linkage disequilibrium from population-level high-throughput sequencing data.Genetics · 2014Article
- BLESS: bloom filter-based error correction solution for high-throughput sequencing reads.Bioinformatics (Oxford, England) · 2014Article
- The impact of whole-genome sequencing on the reconstruction of human population history.Nature reviews. Genetics · 2014Review
- Article
- Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications.BMC genomics · 2013Article
- The genomics of selection in dogs and the parallel evolution between dogs and humans.Nature communications · 2013Article
- Detecting selective sweeps from pooled next-generation sequencing samples.Molecular biology and evolution · 2012Article
- Neutrality tests for sequences with missing data.Genetics · 2012Article
- Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data.Frontiers in genetics · 2012Article
- Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance.Genome research · 2011Article
- Inference of population mutation rate and detection of segregating sites from next-generation sequence data.Genetics · 2011Article
- Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof.Heredity · 2011Article
- ECHO: a reference-free short-read error correction algorithm.Genome research · 2011Article
- Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.PloS one · 2011Article
- De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology.PloS one · 2010Article
Corrections and comments
- Erratum issued
Authors and funding
3 authors.
Funding
Abstract
This article is concerned with statistical modeling of shotgun resequencing data and the use of such data for population genetic inference. We model data produced by sequencing-by-synthesis technologies such as the Solexa, 454, and polymerase colony (polony) systems, whose use is becoming increasingly widespread. We show how such data can be used to estimate evolutionary parameters (mutation and recombination rates), despite the fact that the data do not necessarily provide complete or aligned sequence information. We also present two refinements of our methods: one that is more robust to sequencing errors and another that can be used when no reference genome is available.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.