ArticleJournal of molecular evolution2008
Genome-wide analysis of the Fusarium oxysporum mimp family of MITEs and mobilization of both native and de novo created mimps.
Article in Journal of molecular evolution, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Genomic Differences Between TwoJournal of fungi (Basel, Switzerland) · 2025Article
- Horizontal transfers between fungal Fusarium species contributed to successive outbreaks of coffee wilt disease.PLoS biology · 2024Article
- Article
- Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides.BMC genomics · 2021Article
- Basal Rot ofFrontiers in microbiology · 2019Article
- The Distribution of Miniature Impala Elements and SIX Genes in the Fusarium Genus is Suggestive of Horizontal Gene Transfer.Journal of molecular evolution · 2017Article
- The characteristics and functions of a miniature inverted-repeat transposable element TaMITE81 in the 5' UTR of TaCHS7BL from Triticum aestivum.Molecular genetics and genomics : MGG · 2016Article
- Evolutionary genomics of miniature inverted-repeat transposable elements (MITEs) in Brassica.Molecular genetics and genomics : MGG · 2015Article
- Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae.Genome biology and evolution · 2014Article
- Reverse transcriptase and intron number evolution.Stem cell investigation · 2014Article
- MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum.BMC genomics · 2013Article
- Genome-wide comparative analysis of pogo-like transposable elements in different Fusarium species.Journal of molecular evolution · 2011Article
- Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses.Genome biology and evolution · 2011Article
- Article
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Authors and funding
5 authors.
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Abstract
We have performed a genome-wide analysis of the mimp family of miniature inverted-repeat transposable elements, taking advantage of the recent release of the F. oxysporum genome sequence. Using different approaches, we detected 103 mimp elements, corresponding to 75 nonredundant copies, half of which are located on a single small chromosome. Phylogenetic analysis identified at least six subfamilies, all remarkably homogeneous in size and sequence. Based on high sequence identity in the terminal inverted repeats (TIRs), mimp elements were connected to different impala members. To gain insights into the mechanisms at the origin and amplification of mimps, we studied the potential of impala to cross-mobilize different mimps, native but also created de novo by inserting a short DNA segment between two TIRs. Our results show that TIR sequences are the main requirement for mobilization but that additional parameters in the internal region are likely to influence transposition efficiency. Finally, we show that integration site preference of native versus newly transposed mimps greatly varies in the host genomes used in this study.
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