Evidence map›Paper›PMID 18981164›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2008

Multiple glycines in TCR alpha-chains determine clonally diverse nature of human T cell memory to influenza A virus.

Yuri N Naumov, Elena N Naumova, Maryam B Yassai, Kalyani Kota, Raymond M Welsh, Liisa K Selin

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Molecular basis for universal HLA-A*0201-restricted CD8+ T-cell immunity against influenza viruses.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Trial
  2. Identification of multiple public TCR repertoires in chronic beryllium disease.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Trial
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  15. CD8Scientific reports · 2017
    Article
  16. Article
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  19. Vaccination and heterologous immunity: educating the immune system.Transactions of the Royal Society of Tropical Medicine and Hygiene · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yuri N NaumovDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01655, USA. Yuri.Naumov@umassmed.edu
Elena N Naumova
Maryam B Yassai
Kalyani Kota
Raymond M Welsh
Liisa K Selin

Funding

Technologies for Human Cellular ImmunologyU19AI057319 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ROTHMAN, ALAN L · 2003 to 2013
$34.4M
Viral Vector CoreU19AI062627 · NIAID · VERSITI WISCONSIN, INC. · PI GORSKI, JACK A · 2004 to 2008
$11.6M
VIRUS-INDUCED IMMUNOPATHOLOGYR01AR035506 · NIAMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WELSH, RAYMOND M · 1986 to 2008
$3.3M
NIAID NIH HHS AI45751NIAID NIH HHS U19 AI057319NIAID NIH HHS U19-AI057319NIAID NIH HHS U19 AI062627NIAID NIH HHS U19-AI062627NIAMS NIH HHS R01 AR035506
6 · The paper itself

Abstract

Detailed assessment of how the structural properties of T cell receptors affect clonal repertoires of Ag-specific cells is a prerequisite for a better understanding of human antiviral immunity. Herein we examine the alpha TCR repertoires of CD8 T cells reactive against the influenza A viral epitope M1(58-66), restricted by HLA-A2.1. Using molecular cloning, we systematically studied the impact of alpha-chain usage in the formation of T cell memory and revealed that M1(58-66)-specific, clonally diverse VB19 T cells express alpha-chains encoded by multiple AV genes with different CDR3 sizes. A unique feature of these alpha TCRs was the presence of CDR3 fitting to an AGA(G(n))GG-like amino acid motif. This pattern was consistent over time and among different individuals. Further molecular assessment of human CD4(+)CD8(-) and CD4(-)CD8(+) thymocytes led to the conclusion that the poly-Gly/Ala runs in CDR3alpha were a property of immune, but not naive, repertoires and could be attributed to influenza exposure. Repertoires of T cell memory are discussed in the context of clonal diversity, where poly-Gly/Ala runs in the CDR3 of alpha- and beta-chains might provide high levels of TCR flexibility during Ag recognition while gene-encoded CDR1 and CDR2 contribute to the fine specificity of the TCR-peptide MHC interaction.

Indexed as

Gene Rearrangement, alpha-Chain T-Cell Antigen ReceptorImmunologic MemoryAdultAmino Acid MotifsCD8-Positive T-LymphocytesClone CellsFlow CytometryGenes, T-Cell Receptor alphaGlycineHLA-A2 AntigenHumansInfantInfluenza A virusMiddle AgedReceptors, Antigen, T-Cell, alpha-betaReverse Transcriptase Polymerase Chain ReactionGlycineHLA-A2 AntigenM1 protein, Influenza A virusReceptors, Antigen, T-Cell, alpha-betaViral Matrix Proteins

Identifiers

PMID18981164
PMCPMC2646260

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.