Evidence map›Paper›PMID 18978089›Full record

ArticleApplied and environmental microbiology2009

Biodiversity of thermophilic prokaryotes with hydrolytic activities in hot springs of Uzon Caldera, Kamchatka (Russia).

Ilya V Kublanov, Anna A Perevalova, Galina B Slobodkina, Aleksander V Lebedinsky, Salima K Bidzhieva, Tatyana V Kolganova, Elena N Kaliberda, Lev D Rumsh, Thomas Haertlé, Elizaveta A Bonch-Osmolovskaya

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
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  4. Article
  5. Article
  6. Review
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  9. Article
  10. Microorganisms · 2020
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  11. Review
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  13. Article
  14. In vitro degradation of β-amyloid fibrils by microbial keratinase.Alzheimer's & dementia (New York, N. Y.) · 2019
    Article
  15. Article
  16. Draft Genome Sequence ofGenome announcements · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. High Diversity ofFrontiers in microbiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ilya V KublanovWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia. kublanov.ilya@gmail.com
Anna A Perevalova
Galina B Slobodkina
Aleksander V Lebedinsky
Salima K Bidzhieva
Tatyana V Kolganova
Elena N Kaliberda
Lev D Rumsh
Thomas Haertlé
Elizaveta A Bonch-Osmolovskaya

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Samples of water from the hot springs of Uzon Caldera with temperatures from 68 to 87 degrees C and pHs of 4.1 to 7.0, supplemented with proteinaceous (albumin, casein, or alpha- or beta-keratin) or carbohydrate (cellulose, carboxymethyl cellulose, chitin, or agarose) biological polymers, were filled with thermal water and incubated at the same sites, with the contents of the tubes freely accessible to the hydrothermal fluid. As a result, several enrichment cultures growing in situ on different polymeric substrates were obtained. Denaturing gradient gel electrophoresis (DGGE) analysis of 16S rRNA gene fragments obtained after PCR with Bacteria-specific primers showed that the bacterial communities developing on carbohydrates included the genera Caldicellulosiruptor and Dictyoglomus and that those developing on proteins contained members of the Thermotogales order. DGGE analysis performed after PCR with Archaea- and Crenarchaeota-specific primers showed that archaea related to uncultured environmental clones, particularly those of the Crenarchaeota phylum, were present in both carbohydrate- and protein-degrading communities. Five isolates obtained from in situ enrichments or corresponding natural samples of water and sediments represented the bacterial genera Dictyoglomus and Caldanaerobacter as well as new archaea of the Crenarchaeota phylum. Thus, in situ enrichment and consequent isolation showed the diversity of thermophilic prokaryotes competing for biopolymers in microbial communities of terrestrial hot springs.

Indexed as

BiodiversityArchaeaBacteriaDNA, ArchaealDNA, BacterialDNA FingerprintingDNA, RibosomalHot SpringsHot TemperatureHydrogen-Ion ConcentrationMolecular Sequence DataPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16SRussiaSequence Analysis, DNADNA, ArchaealDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID18978089
PMCPMC2612224

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.