Evidence map›Paper›PMID 18978056›Full record

ArticleJournal of bacteriology2009

AglC and AglK are involved in biosynthesis and attachment of diacetylated glucuronic acid to the N-glycan in Methanococcus voltae.

Bonnie Chaban, Susan M Logan, John F Kelly, Ken F Jarrell

Abstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identifying Components of aFrontiers in microbiology · 2021
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  5. Article
  6. Identification of a novelThe Journal of biological chemistry · 2020
    Article
  7. Frontiers in microbiology · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Emerging facets of prokaryotic glycosylation.FEMS microbiology reviews · 2017
    Review
  12. The archaellum: how Archaea swim.Frontiers in microbiology · 2015
    Article
  13. N-linked glycosylation in Archaea: a structural, functional, and genetic analysis.Microbiology and molecular biology reviews : MMBR · 2014
    Review
  14. Article
  15. Article
  16. Article
  17. Extreme sweetness: protein glycosylation in archaea.Nature reviews. Microbiology · 2013
    Review
  18. Review
  19. Bacterial cell-envelope glycoconjugates.Advances in carbohydrate chemistry and biochemistry · 2013
    Review
  20. Type IV pilin proteins: versatile molecular modules.Microbiology and molecular biology reviews : MMBR · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Bonnie ChabanDepartment of Microbiology and Immunology, Queen's University, Kingston, Ontario, K7L 3N6, Canada.
Susan M Logan
John F Kelly
Ken F Jarrell
Institute for Biological Sciences · CAQueen's University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in the field of prokaryotic N-glycosylation have established a foundation for the pathways and proteins involved in this important posttranslational protein modification process. To continue the study of the Methanococcus voltae N-glycosylation pathway, characteristics of known eukaryotic, bacterial, and archaeal proteins involved in the N-glycosylation process were examined and used to select candidate M. voltae genes for investigation as potential glycosyl transferase and flippase components. The targeted genes were knocked out via linear gene replacement, and the resulting effects on N-glycan assembly were identified through flagellin and surface (S) layer protein glycosylation defects. This study reports the finding that deletion of two putative M. voltae glycosyl transferase genes, designated aglC (for archaeal glycosylation) and aglK, interfered with proper N-glycosylation. This resulted in flagellin and S-layer proteins with significantly reduced apparent molecular masses, loss of flagellar assembly, and absence of glycan attachment. Given previous knowledge of both the N-glycosylation pathway in M. voltae and the general characteristics of N-glycosylation components, it appears that AglC and AglK are involved in the biosynthesis or transfer of diacetylated glucuronic acid within the glycan structure. In addition, a knockout of the putative flippase candidate gene (Mv891) had no effect on N-glycosylation but did result in the production of giant cells with diameters three to four times that of wild-type cells.

Indexed as

AcetylationArchaeal ProteinsDNA PrimersFlagellaFlagellinGenes, ArchaealGlucuronic AcidGlycosylationMethanococcusModels, BiologicalPolymerase Chain ReactionPolysaccharidesProtein Processing, Post-TranslationalTrisaccharidesArchaeal ProteinsDNA PrimersFlagellinGlucuronic AcidPolysaccharidesTrisaccharides

Identifiers

PMID18978056
PMCPMC2612417
OpenAlexW2095858448

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.