ArticleNucleic acids research2009
Minimotif miner 2nd release: a database and web system for motif search.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed.
- Decoding allosteric landscapes: computational methodologies for enzyme modulation and drug discovery.RSC chemical biology · 2025Review
- Article
- The carboxy-terminus, a key regulator of protein function.Critical reviews in biochemistry and molecular biology · 2019Review
- Minimotif Miner 4: a million peptide minimotifs and counting.Nucleic acids research · 2018Article
- Minimotifs dysfunction is pervasive in neurodegenerative disorders.Alzheimer's & dementia (New York, N. Y.) · 2018Article
- The Functional Human C-Terminome.PloS one · 2016Article
- The minimotif synthesis hypothesis for the origin of life.Journal of translational science · 2016Article
- The EFF-1A Cytoplasmic Domain Influences Hypodermal Cell Fusions in C. elegans But Is Not Dependent on 14-3-3 Proteins.PloS one · 2016Article
- Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad.Cell communication and signaling : CCS · 2015Review
- Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.Nucleic acids research · 2015Article
- Prediction and experimental characterization of nsSNPs altering human PDZ-binding motifs.PloS one · 2014Article
- iELM--a web server to explore short linear motif-mediated interactions.Nucleic acids research · 2012Article
- PepSite: prediction of peptide-binding sites from protein surfaces.Nucleic acids research · 2012Article
- Profile-based short linear protein motif discovery.BMC bioinformatics · 2012Article
- Achieving high accuracy prediction of minimotifs.PloS one · 2012Article
- ELM--the database of eukaryotic linear motifs.Nucleic acids research · 2012Article
- Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences.Nucleic acids research · 2012Article
- Article
- Article
- The molecular basis of the Caskin1 and Mint1 interaction with CASK.Journal of molecular biology · 2011Article
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Authors and funding
11 authors.
Funding
Abstract
Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu.
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