ArticleNucleic acids research2009
Michigan molecular interactions r2: from interacting proteins to pathways.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 2 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
48 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Modeling complex genetic and environmental influences on comorbid bipolar disorder with tobacco use disorder.BMC medical genetics · 2010Pooled it
- Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks.Journal of biomedicine & biotechnology · 2010Pooled it
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- Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis.Genome medicine · 2016Article
- Acquisition of estrogen independence induces TOB1-related mechanisms supporting breast cancer cell proliferation.Oncogene · 2016Article
- Time-course microarray analysis for identifying candidate genes involved in obesity-associated pathological changes in the mouse colon.Genes & nutrition · 2016Article
- PADPIN: protein-protein interaction networks of angiogenesis, arteriogenesis, and inflammation in peripheral arterial disease.Physiological genomics · 2015Article
- Inference of Low and High-Grade Glioma Gene Regulatory Networks Delineates the Role of Rnd3 in Establishing Multiple Hallmarks of Cancer.PLoS genetics · 2015Article
- Inferring regulatory networks from experimental morphological phenotypes: a computational method reverse-engineers planarian regeneration.PLoS computational biology · 2015Article
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- Integrative biology identifies shared transcriptional networks in CKD.Journal of the American Society of Nephrology : JASN · 2014Article
- Biological network exploration with Cytoscape 3.Current protocols in bioinformatics · 2014Article
- Nucleotide excision repair/transcription gene defects in the fetus and impaired TFIIH-mediated function in transcription in placenta leading to preeclampsia.BMC genomics · 2014Article
- GeneSense: a new approach for human gene annotation integrated with protein-protein interaction networks.Scientific reports · 2014Article
- Angiogenesis interactome and time course microarray data reveal the distinct activation patterns in endothelial cells.PloS one · 2014Article
- UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks.Nucleic acids research · 2014Article
- Reconstruction of the experimentally supported human protein interactome: what can we learn?BMC systems biology · 2013Article
- Somatic alterations contributing to metastasis of a castration-resistant prostate cancer.Human mutation · 2013Article
- Summarizing cellular responses as biological process networks.BMC systems biology · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
18 authors.
Funding
Abstract
Molecular interaction data exists in a number of repositories, each with its own data format, molecule identifier and information coverage. Michigan molecular interactions (MiMI) assists scientists searching through this profusion of molecular interaction data. The original release of MiMI gathered data from well-known protein interaction databases, and deep merged this information while keeping track of provenance. Based on the feedback received from users, MiMI has been completely redesigned. This article describes the resulting MiMI Release 2 (MiMIr2). New functionality includes extension from proteins to genes and to pathways; identification of highlighted sentences in source publications; seamless two-way linkage with Cytoscape; query facilities based on MeSH/GO terms and other concepts; approximate graph matching to find relevant pathways; support for querying in bulk; and a user focus-group driven interface design. MiMI is part of the NIH's; National Center for Integrative Biomedical Informatics (NCIBI) and is publicly available at: http://mimi.ncibi.org.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.