ArticleNucleic acids research2009
Petabyte-scale innovations at the European Nucleotide Archive.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
38 citing papers in PubMed.
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- UTexas Aptamer Database: the collection and long-term preservation of aptamer sequence information.Nucleic acids research · 2024Article
- Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB).Journal of integrative bioinformatics · 2020Article
- Scientific Discovery Games for Biomedical Research.Annual review of biomedical data science · 2019Article
- ConvertingJournal of ginseng research · 2017Article
- Reconstructing 16S rRNA genes in metagenomic data.Bioinformatics (Oxford, England) · 2015Article
- ArrayExpress update--simplifying data submissions.Nucleic acids research · 2015Article
- Integrating pathways of Parkinson's disease in a molecular interaction map.Molecular neurobiology · 2014Review
- ArrayExpress update--trends in database growth and links to data analysis tools.Nucleic acids research · 2013Article
- Building models using Reactome pathways as templates.Methods in molecular biology (Clifton, N.J.) · 2013Article
- Minireview: progress and challenges in proteomics data management, sharing, and integration.Molecular endocrinology (Baltimore, Md.) · 2012Review
- DIPSBC--data integration platform for systems biology collaborations.BMC bioinformatics · 2012Article
- Comparative analysis of RNA families reveals distinct repertoires for each domain of life.PLoS computational biology · 2012Article
- Aptamer Base: a collaborative knowledge base to describe aptamers and SELEX experiments.Database : the journal of biological databases and curation · 2012Article
- Enzyme informatics.Current topics in medicinal chemistry · 2012Review
- A case study for efficient management of high throughput primary lab data.BMC research notes · 2011Article
- ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.Nucleic acids research · 2011Article
- Methods and strategies for gene structure curation in WormBase.Database : the journal of biological databases and curation · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
27 authors.
Funding
Abstract
Dramatic increases in the throughput of nucleotide sequencing machines, and the promise of ever greater performance, have thrust bioinformatics into the era of petabyte-scale data sets. Sequence repositories, which provide the feed for these data sets into the worldwide computational infrastructure, are challenged by the impact of these data volumes. The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/embl), comprising the EMBL Nucleotide Sequence Database and the Ensembl Trace Archive, has identified challenges in the storage, movement, analysis, interpretation and visualization of petabyte-scale data sets. We present here our new repository for next generation sequence data, a brief summary of contents of the ENA and provide details of major developments to submission pipelines, high-throughput rule-based validation infrastructure and data integration approaches.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.