Evidence map›Paper›PMID 18976725›Full record

ArticleAmerican journal of human genetics2008

Identification of a 2 Mb human ortholog of Drosophila eyes shut/spacemaker that is mutated in patients with retinitis pigmentosa.

Rob W J Collin, Karin W Littink, B Jeroen Klevering, L Ingeborgh van den Born, Robert K Koenekoop, Marijke N Zonneveld, Ellen A W Blokland, Tim M Strom, Carel B Hoyng, Anneke I den Hollander and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 167 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The mutational and clinical spectrum ofFrontiers in genetics · 2026
    Article
  7. Article
  8. Non-coding single-nucleotide and structural variants affecting the EYS putative promoter cause autosomal recessive retinitis pigmentosa.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  9. Article
  10. ProteinMolecules (Basel, Switzerland) · 2025
    Review
  11. Genetic Landscape of Nonsyndromic Retinitis Pigmentosa in Portugal.Advances in experimental medicine and biology · 2025
    Review
  12. Megabase Deletion of the Human EYS Locus Using CRISPR/Cas9.Advances in experimental medicine and biology · 2025
    Article
  13. Article
  14. Ocular genetics in the Japanese population.Japanese journal of ophthalmology · 2024
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Deletion of POMT2 in Zebrafish Causes Degeneration of Photoreceptors.International journal of molecular sciences · 2022
    Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Rob W J CollinDepartment of Human Genetics, Radboud University Nijmegen Medical Centre, 6525 GA Nijmegen, the Netherlands. r.collin@antrg.umcn.nl
Karin W Littink
B Jeroen Klevering
L Ingeborgh van den Born
Robert K Koenekoop
Marijke N Zonneveld
Ellen A W Blokland
Tim M Strom
Carel B Hoyng
Anneke I den Hollander
Frans P M Cremers
Radboud University Medical Center · NLRadboud University Nijmegen · NLRotterdam Eye Hospital · NLHelmholtz Zentrum München · DEMcGill University Health Centre · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In patients with autosomal-recessive retinitis pigmentosa (arRP), homozygosity mapping was performed for detection of regions harboring genes that might be causative for RP. In one affected sib pair, a shared homozygous region of 5.0 Mb was identified on chromosome 6, within the RP25 locus. One of the genes residing in this interval was the retina-expressed gene EGFL11. Several genes resembling EGFL11 were predicted just centromeric of EGFL11. Extensive long-range RT-PCR, combined with 5'- and 3'- RACE analysis, resulted in the identification of a 10-kb transcript, starting with the annotated exons of EGFL11 and spanning 44 exons and 2 Mb of genomic DNA. The transcript is predicted to encode a 3165-aa extracellular protein containing 28 EGF-like and five laminin A G-like domains. Interestingly, the second part of the protein was found to be the human ortholog of Drosophila eyes shut (eys), also known as spacemaker, a protein essential for photoreceptor morphology. Mutation analysis in the sib pair homozygous at RP25 revealed a nonsense mutation (p.Tyr3156X) segregating with RP. The same mutation was identified homozygously in three arRP siblings of an unrelated family. A frame-shift mutation (pPro2238ProfsX16) was found in an isolated RP patient. In conclusion, we identified a gene, coined eyes shut homolog (EYS), consisting of EGFL11 and the human ortholog of Drosophila eys, which is mutated in patients with arRP. With a size of 2 Mb, it is one of the largest human genes, and it is by far the largest retinal dystrophy gene. The discovery of EYS might shed light on a critical component of photoreceptor morphogenesis.

Indexed as

MutationAmino Acid SequenceAmino Acid SubstitutionAnimalsCase-Control StudiesChromosome MappingChromosomes, Human, Pair 6Codon, NonsenseDNA Mutational AnalysisDrosophilaDrosophila ProteinsElectroretinographyExonsEye ProteinsFemaleFrameshift MutationCodon, NonsenseDrosophila ProteinsEye Proteinseys protein, DrosophilaEYS protein, humanRNA, Messenger

Identifiers

PMID18976725
PMCPMC2668042
OpenAlexW2166222667

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.