Evidence map›Paper›PMID 18974887›Full record

ArticlePloS one2008

Identification of serotype in culture negative pneumococcal meningitis using sequential multiplex PCR: implication for surveillance and vaccine design.

Samir K Saha, Gary L Darmstadt, Abdullah H Baqui, Belal Hossain, Maksuda Islam, Dona Foster, Hassan Al-Emran, Aliya Naheed, Shams El Arifeen, Stephen P Luby and 2 more

Abstract readComparative StudyValidation Study
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Trial
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  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Serotypes & penicillin susceptibility ofThe Indian journal of medical research · 2018
    Article
  11. Assessment of Postvaccine Immunity againstJournal of immunology research · 2018
    Article
  12. Pneumococcal Vaccines - How Many Serotypes are Enough?Indian journal of pediatrics · 2018
    Review
  13. Germs · 2017
    Article
  14. Article
  15. Rapid identification of Streptococcus pneumoniae in blood cultures by using the ImmuLex, Slidex and Wellcogen latex agglutination tests and the BinaxNOW antigen test.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Samir K SahaDepartment of Microbiology, Bangladesh Institute of Child Health, Dhaka Shishu (Children) Hospital, Dhaka, Bangladesh. sksaha@bangla.net
Gary L Darmstadt
Abdullah H Baqui
Belal Hossain
Maksuda Islam
Dona Foster
Hassan Al-Emran
Aliya Naheed
Shams El Arifeen
Stephen P Luby
Mathuram Santosham
Derrick Crook

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundPCR-based serotyping of Streptococcus pneumoniae has been proposed as a simpler approach than conventional methods, but has not been applied to strains in Asia where serotypes are diverse and different from other part of the world. Furthermore, PCR has not been used to determine serotype distribution in culture-negative meningitis cases. METHODOLOGY: Thirty six serotype-specific primers, 7 newly designed and 29 previously published, were arranged in 7 multiplex PCR sets, each in new hierarchies designed for overall serotype distribution in Bangladesh, and specifically for meningitis and non-meningitis isolates. Culture-negative CSF specimens were then tested directly for serotype-specific sequences using the meningitis-specific set of primers. PCR-based serotyping of 367 strains of 56 known serotypes showed 100% concordance with quellung reaction test. The first 7 multiplex reactions revealed the serotype of 40% of all, and 31% and 48% non-meningitis and meningitis isolates, respectively. By redesigning the multiplex scheme specifically for non-meningitis or meningitis, the quellung reaction of 43% and 48% of respective isolates could be identified. Direct examination of 127 culture-negative CSF specimens, using the meningitis-specific set of primers, yielded serotype for 51 additional cases.

conclusionsThis PCR approach, could improve ascertainment of pneumococcal serotype distributions, especially for meningitis in settings with high prior use of antibiotics.

Indexed as

AlgorithmsBangladeshCost-Benefit AnalysisDNA, BacterialDNA PrimersDrug DesignHumansMeningitis, PneumococcalPneumococcal VaccinesPolymerase Chain ReactionPopulation SurveillanceQuality ControlSerotypingStreptococcus pneumoniaeDNA, BacterialDNA PrimersPneumococcal Vaccines

Identifiers

PMID18974887
PMCPMC2571985

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.