ArticleFrontiers in neuroinformatics2007
A formal ontology of subcellular neuroanatomy.
Article in Frontiers in neuroinformatics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Article
- The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments.Journal of biomedical semantics · 2013Article
- Toward knowledge support for analysis and interpretation of complex traits.Genome biology · 2013Review
- An ontological approach to describing neurons and their relationships.Frontiers in neuroinformatics · 2012Article
- Invertebrate neurophylogeny: suggested terms and definitions for a neuroanatomical glossary.Frontiers in zoology · 2010Article
- Spatio-structural granularity of biological material entities.BMC bioinformatics · 2010Article
- Ontologies for Neuroscience: What are they and What are they Good for?Frontiers in neuroscience · 2009Article
- The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.Neuroinformatics · 2008Article
- NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF.Neuroinformatics · 2008Article
- Bioimage informatics: a new area of engineering biology.Bioinformatics (Oxford, England) · 2008Review
- The cell centered database project: an update on building community resources for managing and sharing 3D imaging data.Journal of structural biology · 2008Article
- BAMS Neuroanatomical Ontology: Design and Implementation.Frontiers in neuroinformatics · 2008Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
The complexity of the nervous system requires high-resolution microscopy to resolve the detailed 3D structure of nerve cells and supracellular domains. The analysis of such imaging data to extract cellular surfaces and cell components often requires the combination of expert human knowledge with carefully engineered software tools. In an effort to make better tools to assist humans in this endeavor, create a more accessible and permanent record of their data, and to aid the process of constructing complex and detailed computational models, we have created a core of formalized knowledge about the structure of the nervous system and have integrated that core into several software applications. In this paper, we describe the structure and content of a formal ontology whose scope is the subcellular anatomy of the nervous system (SAO), covering nerve cells, their parts, and interactions between these parts. Many applications of this ontology to image annotation, content-based retrieval of structural data, and integration of shared data across scales and researchers are also described.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.