ArticleNucleic acids research2009
PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
37 citing papers in PubMed, 83 citations in OpenAlex.
- A Class IV Adenylate Cyclase, CyaB, Is Required for Capsule Polysaccharide Production and Biofilm Formation in Vibrio parahaemolyticus.Applied and environmental microbiology · 2023Article
- Article
- Molecular Mechanisms of Phosphate Stress Activation of Pseudomonas aeruginosa Quorum Sensing Systems.mSphere · 2020Article
- RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach.Frontiers in microbiology · 2020Article
- Defining the regulon of genes controlled by σMolecular microbiology · 2019Article
- BACTOME-a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates.Nucleic acids research · 2019Article
- Automatic extraction of protein-protein interactions using grammatical relationship graph.BMC medical informatics and decision making · 2018Article
- Differential RNA Sequencing Implicates Sulfide as the Master Regulator of SApplied and environmental microbiology · 2018Article
- PRODORIC2: the bacterial gene regulation database in 2018.Nucleic acids research · 2018Article
- Tailor-made transcriptional biosensors for optimizing microbial cell factories.Journal of industrial microbiology & biotechnology · 2017Review
- The Master Regulators of the Fla1 and Fla2 Flagella of Rhodobacter sphaeroides Control the Expression of Their Cognate CheY Proteins.Journal of bacteriology · 2017Article
- Modelling microbial metabolic rewiring during growth in a complex medium.BMC genomics · 2016Article
- Article
- Article
- Deciphering transcriptional regulations coordinating the response to environmental changes.BMC bioinformatics · 2016Article
- Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.Nucleic acids research · 2016Article
- Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria.Database : the journal of biological databases and curation · 2016Article
- Article
- Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.Journal of bacteriology · 2015Article
- Fur is the master regulator of the extraintestinal pathogenic Escherichia coli response to serum.mBio · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PRODORIC is a database that provides annotated information on the regulation of gene expression in prokaryotes. It integrates a large compilation of gene regulatory data including transcription factor binding sites, promoter structures and gene expression patterns. The whole dataset is manually curated and relies on published results extracted from the scientific literature. The current extended version of PRODORIC contains gene regulatory data for several new microorganisms. Major improvements were realized in the design of the web interface and the accessibility of the stored information. The database was further improved by the implementation of various new tools for the elucidation of gene regulatory interactions. Thus, the PRODORIC platform represents a framework for the interactive exploration, prediction and evaluation of gene regulatory networks in prokaryotes. PRODORIC is accessible at http://www.prodoric.de.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.