Evidence map›Paper›PMID 18974144›Full record

ArticleCancer research2008

Common familial colorectal cancer linked to chromosome 7q31: a genome-wide analysis.

Deborah W Neklason, Richard A Kerber, David B Nilson, Hoda Anton-Culver, Ann G Schwartz, Constance A Griffin, Jan T Lowery, Joellen M Schildkraut, James P Evans, Gail E Tomlinson and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Identification of novel variants in colorectal cancer families by high-throughput exome sequencing.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2013
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 13 institutions in 1 country.

Deborah W NeklasonHuntsman Cancer Institute, University of Utah, Salt Lake City, Utah 84112-5550, USA. Deb.neklason@hci.utah.edu
Richard A Kerber
David B Nilson
Hoda Anton-Culver
Ann G Schwartz
Constance A Griffin
Jan T Lowery
Joellen M Schildkraut
James P Evans
Gail E Tomlinson
Louise C Strong
Alexander R Miller
Jill E Stopfer
Dianne M Finkelstein
Prakash M Nadkarni
Carol H Kasten
Geraldine P Mineau
Randall W Burt
Huntsman Cancer Institute · USColorado School of Public Health · USDuke University · USJohns Hopkins University · USMassachusetts General Hospital · USNational Cancer Institute · USThe Barbara Ann Karmanos Cancer Institute · USThe University of Texas MD Anderson Cancer Center · USThe University of Texas Southwestern Medical Center · USUniversity of California, Irvine · USUniversity of New Haven · USUniversity of North Carolina at Chapel Hill · USUniversity of Pennsylvania · US

Funding

TCF/LEF function during intestinal maintenance and colon tumorigenesisP01CA073992 · NCI · UNIVERSITY OF UTAH · PI TOPHAM, MATTHEW KENT · 1998 to 2014
$29.7M
VIRAL DAMAGE TO BRAIN AND NEUROMUSCULAR SYSTEMM01RR000064 · NCRR · UNIVERSITY OF UTAH · PI SWOBODA, KATHRYN J. · 1985 to 2008
$21.7M
USC Consortium:Colorectal Cancer Family RegistryU01CA074799 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAILE, ROBERT WILLIAM · 1997 to 2008
$20.4M
The Colon Cancer Family Registry: USC ConsortiumU24CA074799 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAILE, ROBERT WILLIAM · 2008 to 2011
$7.6M
TEXAS CANCER GENETICS CONSORTIUMU24CA078142 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI STRONG, LOUISE C · 1998 to 2006
$6.3M
COORDINATING CENTER FOR THE CANCER GENETICS NETWORKU01CA078284 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI FINKELSTEIN, DIANNE M · 1998 to 2006
$6.0M
ROCKY MOUNTAIN CANCER GENETICS COALITIONU24CA078174 · NCI · UNIVERSITY OF UTAH · PI MINEAU, GERALDINE P · 1998 to 2006
$5.5M
SURVEILLANCE, EPIDEMIOLOGY, AND END RESULTS--SEERN01PC065064 · PC · WAYNE STATE UNIVERSITY · PI SCHWARTZ, ANN G · 1996 to 2000
$4.5M
CAROLINA AND GEORGIA GENETICS NETWORK CENTERU24CA078157 · NCI · DUKE UNIVERSITY · PI SCHILDKRAUT, JOELLEN M. · 1998 to 2004
$4.4M
MID ATLANTIC CANCER GENETICS NETWORKU24CA078148 · NCI · JOHNS HOPKINS UNIVERSITY · PI GRIFFIN, CONSTANCE A · 1998 to 2005
$4.1M
UCI UCSD CANCER GENETICS NETWORKU24CA078134 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANTON-CULVER, HODA A. · 1998 to 2006
$3.2M
NCI CANCER GENETICS NETWORK INFORMATICS CENTER AT UCIU01CA078285 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANTON-CULVER, HODA A. · 1998 to 2006
$1.9M
NCI NIH HHS CA74799NCI NIH HHS CA78157-05S1NCI NIH HHS N01 PC035141NCI NIH HHS N01 PC035145NCI NIH HHS N01 PC065064NCI NIH HHS N01-PC-35141NCI NIH HHS N01-PC35145NCI NIH HHS N01-PC67000NCI NIH HHS P01 CA073992NCI NIH HHS P01-CA073992NCI NIH HHS U01 CA074799NCI NIH HHS U01 CA078284NCI NIH HHS U01-CA078284NCI NIH HHS U01 CA078285NCI NIH HHS U01-CA78285NCI NIH HHS U24 CA074799NCI NIH HHS U24 CA078134NCI NIH HHS U24 CA078142NCI NIH HHS U24 CA078148NCI NIH HHS U24 CA078157NCI NIH HHS U24 CA078174NCI NIH HHS U24-CA78134NCI NIH HHS U24-CA78142NCI NIH HHS U24-CA78148NCI NIH HHS U24-CA78174NCRR NIH HHS M01 RR000064NCRR NIH HHS M01-RR00064
6 · The paper itself

Abstract

Present investigations suggest that approximately 30% of colorectal cancer cases arise on the basis of inherited factors. We hypothesize that the majority of inherited factors are moderately penetrant genes, common in the population. We use an affected sibling pair approach to identify genetic regions that are coinherited by siblings with colorectal cancer. Individuals from families with at least two siblings diagnosed with colorectal adenocarcinoma or high-grade dysplasia were enrolled. Known familial colorectal cancer syndromes were excluded. A genome-wide scan on 151 DNA samples from 70 kindreds was completed using deCODE 1100 short tandem repeat marker set at an average 4-cM density. Fine mapping on a total of 184 DNAs from 83 kindreds was done in regions suggesting linkage. Linkage analysis was accomplished with Merlin analysis package. Nonparametric linkage analysis revealed three genetic regions with logarithm of the odds (LOD) scores >or=2.0: Ch. 3q29, LOD 2.61 (P = 0.0003); Ch. 4q31.3, LOD 2.13 (P = 0.0009); and Ch. 7q31.31, LOD 3.08 (P = 0.00008). Affected siblings with increased sharing at the 7q31 locus have a 3.8-year (+/- 3.5) earlier age of colorectal cancer onset although this is not statistically significant (P = 0.11). No significant linkage was found near genes causing known syndromes or regions previously reported (8q24, 9q22, and 11q23). The chromosome 3q21-q24 region reported to be linked in colorectal cancer relative pairs is supported by our study, albeit a minor peak (LOD 0.9; P = 0.02). No known familial cancer genes reside in the 7q31 locus, and thus the identified region may contain a novel susceptibility gene responsible for common familial colorectal cancer.

Indexed as

Chromosomes, Human, Pair 7Genetic Predisposition to DiseaseGenome, HumanAdultAgedAged, 80 and overColorectal NeoplasmsHumansLod ScoreMiddle Aged

Identifiers

PMID18974144
PMCPMC2927856
OpenAlexW2160191936

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.