Evidence map›Paper›PMID 18974097›Full record

ArticleThe Journal of biological chemistry2009

Nitration of solvent-exposed tyrosine 74 on cytochrome c triggers heme iron-methionine 80 bond disruption. Nuclear magnetic resonance and optical spectroscopy studies.

Luciano A Abriata, Adriana Cassina, Verónica Tórtora, Mónica Marín, Josá M Souza, Laura Castro, Alejandro J Vila, Rafael Radi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. De novo sequencing and construction of a unique antibody for the recognition of alternative conformations of cytochromeProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Article
  4. Post-Translational Modifications of CytochromeInternational journal of molecular sciences · 2020
    Review
  5. Review
  6. Article
  7. Article
  8. Tissue-specific regulation of cytochrome c by post-translational modifications: respiration, the mitochondrial membrane potential, ROS, and apoptosis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Tyrosine nitration as mediator of cell death.Cellular and molecular life sciences : CMLS · 2014
    Review
  15. Cardiolipin modulates allosterically the nitrite reductase activity of horse heart cytochrome c.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Article
  16. Article
  17. Article
  18. Review
  19. Peroxynitrite, a stealthy biological oxidant.The Journal of biological chemistry · 2013
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Luciano A AbriataInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay.
Adriana CassinaInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay; Instituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay.
Verónica TórtoraInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay; Instituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay.
Mónica MarínInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay; Instituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay.
Josá M SouzaInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay; Instituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay.
Laura CastroInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay; Instituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay.
Alejandro J VilaInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay. Electronic address: vila@ibr.gov.ar.
Rafael RadiInstituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay; Instituto de Biología Molecular y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, 2000 Rosario, Argentina, Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, Center for Free Radical and Biomedical Research, Facultad de Medicina, Universidad de la República, 11800 Montevideo, Uruguay, and Sección Bioquímica-Biología Molecular, Facultad de Ciencias, Universidad de la República, 11400 Montevideo, Uruguay. Electronic address: rradi@fmed.edu.uy.
National University of Rosario · ARUniversidad de la República · UYUniversidad de Montevideo · UY

Funding

PARAMAGNETIC NMR OF ELECTRON TRANSFER COPPER PROTEINSR01GM068682 · NIGMS · INSTITUTE OF MOLECULAR /CELLULAR BIOLOGY · PI VILA, ALEJANDRO J · 2005 to 2007
$316k
Howard Hughes Medical InstituteNIGMS NIH HHS R01-GM068682
6 · The paper itself

Abstract

Cytochrome c, a mitochondrial electron transfer protein containing a hexacoordinated heme, is involved in other physiologically relevant events, such as the triggering of apoptosis, and the activation of a peroxidatic activity. The latter occurs secondary to interactions with cardiolipin and/or post-translational modifications, including tyrosine nitration by peroxynitrite and other nitric oxide-derived oxidants. The gain of peroxidatic activity in nitrated cytochrome c has been related to a heme site transition in the physiological pH region, which normally occurs at alkaline pH in the native protein. Herein, we report a spectroscopic characterization of two nitrated variants of horse heart cytochrome c by using optical spectroscopy studies and NMR. Highly pure nitrated cytochrome c species modified at solvent-exposed Tyr-74 or Tyr-97 were generated after treatment with a flux of peroxynitrite, separated, purified by preparative high pressure liquid chromatography, and characterized by mass spectrometry-based peptide mapping. It is shown that nitration of Tyr-74 elicits an early alkaline transition with a pKa = 7.2, resulting in the displacement of the sixth and axial iron ligand Met-80 and replacement by a weaker Lys ligand to yield an alternative low spin conformation. Based on the study of site-specific Tyr to Phe mutants in the four conserved Tyr residues, we also show that this transition is not due to deprotonation of nitro-Tyr-74, but instead we propose a destabilizing steric effect of the nitro group in the mobile Omega-loop of cytochrome c, which is transmitted to the iron center via the nearby Tyr-67. The key role of Tyr-67 in promoting the transition through interactions with Met-80 was further substantiated in the Y67F mutant. These results therefore provide new insights into how a remote post-translational modification in cytochrome c such as tyrosine nitration triggers profound structural changes in the heme ligation and microenvironment and impacts in protein function.

Indexed as

Amino Acid SubstitutionAnimalsApoptosisCardiolipinsCytochromes cHemeHorsesHydrogen-Ion ConcentrationIronMitochondrial ProteinsNuclear Magnetic Resonance, BiomolecularOxidation-ReductionPeroxynitrous AcidPoint MutationProtein Processing, Post-TranslationalTyrosineCardiolipinsCytochromes cHemeIronMitochondrial ProteinsPeroxynitrous AcidTyrosine

Identifiers

PMID18974097
PMCPMC2610516
OpenAlexW2003108616

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.