Evidence map›Paper›PMID 18973837›Full record

ReviewBiochimica et biophysica acta2009

Transcriptional networks in root cell fate specification.

Anjali S Iyer-Pascuzzi, Philip N Benfey

Open access · greenAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Roles for IBA-derived auxin in plant development.Journal of experimental botany · 2018
    Review
  7. Cell type-specific transcriptional profiling: implications for metabolite profiling.The Plant journal : for cell and molecular biology · 2012
    Review
  8. Article
  9. Article
  10. A developmental framework for endodermal differentiation and polarity.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  11. Article
  12. Article
  13. Article
  14. The stem cell--chromatin connection.Seminars in cell & developmental biology · 2009
    Review
  15. ER-resident proteins PDR2 and LPR1 mediate the developmental response of root meristems to phosphate availability.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Anjali S Iyer-PascuzziDepartment of Biology, Duke University, Durham NC 27708, USA.
Philip N Benfey
Center for Systems Biology · USDuke University · US

Funding

Project 6P50GM081883 · NIGMS · DUKE UNIVERSITY · PI BENFEY, PHILIP N · 2007 to 2012
$14.9M
MOLECULAR GENETIC ANALYSIS OF ROOT MORPHOGENESISR01GM043778 · NIGMS · ROCKEFELLER UNIVERSITY · PI BENFEY, PHILIP N · 1991 to 2017
$5.4M
NIGMS NIH HHS P50 GM081883NIGMS NIH HHS R01 GM043778
6 · The paper itself

Abstract

Cell fate in the Arabidopsis root is determined by positional information mediated by plant hormones and interpreted by transcriptional networks. In this review, we summarize recent advances in our understanding of the regulatory networks that control cell fate within the root meristem, and in the interplay of these networks with phytohormones. Recent work describing the importance of chromatin organization in tissue patterning is also highlighted. A new, high resolution root expression map detailing the transciptome of nearly all cell types in the Arabidopsis root across developmental timepoints will provide a framework for understanding these networks.

Indexed as

Cell LineageGene Expression Regulation, PlantGene Regulatory NetworksPlant RootsStem Cell Niche

Identifiers

PMID18973837
PMCPMC2691893
OpenAlexW1996435495

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.