ArticleBMC genomics2008
Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the Soleamold bioinformatic platform.
Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 73 citations in OpenAlex.
- Transcriptome analysis of flathead grey mullet (Frontiers in physiology · 2022Article
- The transcriptome of metamorphosing flatfish.BMC genomics · 2016Article
- First haploid genetic map based on microsatellite markers in Senegalese sole (Solea senegalensis, Kaup 1858).Marine biotechnology (New York, N.Y.) · 2015Article
- Article
- Global transcriptome analysis identifies regulated transcripts and pathways activated during oogenesis and early embryogenesis in Atlantic cod.Molecular reproduction and development · 2014Article
- Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes.Frontiers in genetics · 2014Article
- Exploring the larval transcriptome of the common sole (Solea solea L.).BMC genomics · 2013Article
- Genomic approaches to study genetic and environmental influences on fish sex determination and differentiation.Marine biotechnology (New York, N.Y.) · 2012Review
- Genomics in eels--towards aquaculture and biology.Marine biotechnology (New York, N.Y.) · 2012Article
- Transcriptomic characterization of the larval stage in gilthead seabream (Sparus aurata) by 454 pyrosequencing.Marine biotechnology (New York, N.Y.) · 2012Article
- Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes.BMC veterinary research · 2012Article
- Development of EST derived SSRs and SNPs as a genomic resource in Indian catfish, Clarias batrachus.Molecular biology reports · 2012Article
- An ovary transcriptome for all maturational stages of the striped bass (Morone saxatilis), a highly advanced perciform fish.BMC research notes · 2012Article
- Gene expression profiles of the spleen, liver, and head kidney in turbot (Scophthalmus maximus) along the infection process with Aeromonas salmonicida using an immune-enriched oligo-microarray.Marine biotechnology (New York, N.Y.) · 2011Article
- Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.PloS one · 2010Article
- Design and performance of a turbot (Scophthalmus maximus) oligo-microarray based on ESTs from immune tissues.Marine biotechnology (New York, N.Y.) · 2010Article
- Identification and analysis of immune-related transcriptome in Asian seabass Lates calcarifer.BMC genomics · 2010Article
- Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity.BMC genomics · 2010Article
- Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.).BMC genomics · 2010Article
- New insights into molecular pathways associated with flatfish ovarian development and atresia revealed by transcriptional analysis.BMC genomics · 2009Article
Corrections and comments
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Authors and funding
21 authors at 8 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe Senegalese sole, Solea senegalensis, is a highly prized flatfish of growing commercial interest for aquaculture in Southern Europe. However, despite the industrial production of Senegalese sole being hampered primarily by lack of information on the physiological mechanisms involved in reproduction, growth and immunity, very limited genomic information is available on this species.
resultsSequencing of a S. senegalensis multi-tissue normalized cDNA library, from adult tissues (brain, stomach, intestine, liver, ovary, and testis), larval stages (pre-metamorphosis, metamorphosis), juvenile stages (post-metamorphosis, abnormal fish), and undifferentiated gonads, generated 10,185 expressed sequence tags (ESTs). Clones were sequenced from the 3'-end to identify isoform specific sequences. Assembly of the entire EST collection into contigs gave 5,208 unique sequences of which 1,769 (34%) had matches in GenBank, thus showing a low level of redundancy. The sequence of the 5,208 unigenes was used to design and validate an oligonucleotide microarray representing 5,087 unique Senegalese sole transcripts. Finally, a novel interactive bioinformatic platform, Soleamold, was developed for the Senegalese sole EST collection as well as microarray and ISH data.
conclusionNew genomic resources have been developed for S. senegalensis, an economically important fish in aquaculture, which include a collection of expressed genes, an oligonucleotide microarray, and a publicly available bioinformatic platform that can be used to study gene expression in this species. These resources will help elucidate transcriptional regulation in wild and captive Senegalese sole for optimization of its production under intensive culture conditions.
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