Evidence map›Paper›PMID 18973471›Full record

ArticleThe Biochemical journal2009

Molecular characterization of the TonB2 protein from the fish pathogen Vibrio anguillarum.

Claudia S López, R Sean Peacock, Jorge H Crosa, Hans J Vogel

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Structure and Stoichiometry of the Ton Molecular Motor.International journal of molecular sciences · 2020
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Molecular and genetic characterization of the TonB2-cluster TtpC protein in pathogenic vibrios.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Claudia S LópezDepartment of Molecular Microbiology and Immunology L-220, Oregon Health and Science University, Portland, OR 97239, USA.
R Sean Peacock
Jorge H Crosa
Hans J Vogel
University of Calgary · CA

Funding

IRON UPTAKE AS A VIRULENCE FACTOR IN PATHOGENIC VIBRIOSR01AI019018 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI CROSA, JORGE H · 1985 to 2011
$3.9M
Assembly Line Biosynthesis of Bacterial SiderophoresR01GM064600 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI HEFFRON, FRED L · 2002 to 2012
$2.6M
NIAID NIH HHS AI19018NIAID NIH HHS R01 AI019018NIGMS NIH HHS GM64600NIGMS NIH HHS R01 GM064600
6 · The paper itself

Abstract

In the fish pathogen Vibrio anguillarum the TonB2 protein is essential for the uptake of the indigenous siderophore anguibactin. Here we describe deletion mutants and alanine replacements affecting the final six amino acids of TonB2. Deletions of more than two amino acids of the TonB2 C-terminus abolished ferric-anguibactin transport, whereas replacement of the last three residues resulted in a protein with wild-type transport properties. We have solved the high-resolution solution structure of the TonB2 C-terminal domain by NMR spectroscopy. The core of this domain (residues 121-206) has an alphabetabetaalphabeta structure, whereas residues 76-120 are flexible and extended. This overall folding topology is similar to the Escherichia coli TonB C-terminal domain, albeit with two differences: the beta4 strand found at the C-terminus of TonB is absent in TonB2, and loop 3 is extended by 9 A (0.9 nm) in TonB2. By examining several mutants, we determined that a complete loop 3 is not essential for TonB2 activity. Our results indicate that the beta4 strand of E. coli TonB is not required for activity of the TonB system across Gram-negative bacterial species. We have also determined, through NMR chemical-shift-perturbation experiments, that the E. coli TonB binds in vitro to the TonB box from the TonB2-dependent outer membrane transporter FatA; moreover, it can substitute in vivo for TonB2 during ferric-anguibactin transport in V. anguillarum. Unexpectedly, TonB2 did not bind in vitro to the FatA TonB-box region, suggesting that additional factors may be required to promote this interaction. Overall our results indicate that TonB2 is a representative of a different class of TonB proteins.

Indexed as

Amino Acid SequenceAnimalsBacterial Outer Membrane ProteinsBacterial ProteinsConserved SequenceCrystallography, X-RayEscherichia coliFish DiseasesGene DeletionMembrane ProteinsModels, MolecularMolecular Sequence DataMutationNuclear Magnetic Resonance, BiomolecularPeptidesProtein Structure, TertiaryanguibactinBacterial Outer Membrane ProteinsBacterial ProteinsFatA protein, bacteriaMembrane ProteinsPeptidesRecombinant ProteinstonB protein, Bacteria

Identifiers

PMID18973471
PMCPMC3032569
OpenAlexW2025732140

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.