Evidence map›Paper›PMID 18973227›Full record

ArticleInternational journal of cancer2009

Genomic events associated with progression of pleural malignant mesothelioma.

Sergey V Ivanov, Jeremy Miller, Robert Lucito, Chunlao Tang, Alla V Ivanova, Jianming Pei, Michele Carbone, Christina Cruz, Amanda Beck, Craig Webb and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of cancer, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. DNAJA: emerging targets for anti-tumor therapy.Future oncology (London, England) · 2025
    Review
  3. Review
  4. Review
  5. Review
  6. Medical and Surgical Care of Patients With Mesothelioma and Their Relatives Carrying Germline BAP1 Mutations.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2022
    Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Malignant pleural mesothelioma: an update.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2021
    Review
  13. Frontiers in oncology · 2021
    Article
  14. Article
  15. Mesothelium and Malignant Mesothelioma.Journal of developmental biology · 2019
    Review
  16. Article
  17. Heterogeneity in Malignant Pleural Mesothelioma.International journal of molecular sciences · 2018
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Sergey V IvanovDepartment of Cardiothoracic Surgery, Thoracic Surgery Laboratory, NYU Langone Medical Center, New York, NY, USA. Sergey.Ivanov@med.nyu.edu
Jeremy Miller
Robert Lucito
Chunlao Tang
Alla V Ivanova
Jianming Pei
Michele Carbone
Christina Cruz
Amanda Beck
Craig Webb
Daisuke Nonaka
Joseph R Testa
Harvey I Pass
NYU Langone Health · USCold Spring Harbor Laboratory · USFox Chase Cancer Center · USVan Andel Institute · USCancer Center of Hawaii · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
PATHOLOGY, VIROLOGY, AND ANIMAL COREP01CA114047 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI TESTA, JOSEPH R. · 2006 to 2010
$8.0M
NCI NIH HHS CA06927NCI NIH HHS CA114047NCI NIH HHS P01 CA114047NCI NIH HHS P30 CA006927
6 · The paper itself

Abstract

Pleural malignant mesothelioma (MM) is an aggressive cancer with a very long latency and a very short median survival. Little is known about the genetic events that trigger MM and their relation to poor outcome. The goal of our study was to characterize major genomic gains and losses associated with MM origin and progression and assess their clinical significance. We performed Representative Oligonucleotide Microarray Analysis (ROMA) on DNA isolated from tumors of 22 patients who recurred at variable interval with the disease after surgery. The total number of copy number alterations (CNA) and frequent imbalances for patients with short time (<12 months from surgery) and long time to recurrence were recorded and mapped using the Analysis of Copy Errors algorithm. We report a profound increase in CNA in the short-time recurrence group with most chromosomes affected, which can be explained by chromosomal instability associated with MM. Deletions in chromosomes 22q12.2, 19q13.32 and 17p13.1 appeared to be the most frequent events (55-74%) shared between MM patients followed by deletions in 1p, 9p, 9q, 4p, 3p and gains in 5p, 18q, 8q and 17q (23-55%). Deletions in 9p21.3 encompassing CDKN2A/ARF and CDKN2B were characterized as specific for the short-term recurrence group. Analysis of the minimal common areas of frequent gains and losses identified candidate genes that may be involved in different stages of MM: OSM (22q12.2), FUS1 and PL6 (3p21.3), DNAJA1 (9p21.1) and CDH2 (18q11.2-q12.3). Imbalances seen by ROMA were confirmed by Affymetrix genome analysis in a subset of samples.

Indexed as

Gene Expression ProfilingAgedAged, 80 and overDisease ProgressionFemaleGene DosageHumansMaleMesotheliomaMiddle AgedNeoplasm Recurrence, LocalOligonucleotide Array Sequence AnalysisPleural NeoplasmsReverse Transcriptase Polymerase Chain Reaction

Identifiers

PMID18973227
PMCPMC2933144
OpenAlexW2058776632

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.