Evidence map›Paper›PMID 18971333›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Crystal structure of poxvirus thymidylate kinase: an unexpected dimerization has implications for antiviral therapy.

Christophe Caillat, Dimitri Topalis, Luigi A Agrofoglio, Sylvie Pochet, Jan Balzarini, Dominique Deville-Bonne, Philippe Meyer

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 81 citations in OpenAlex.

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  18. In Silico Repurposed Drugs against Monkeypox Virus.Molecules (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Christophe CaillatLaboratoire d'Enzymologie et Biochimie Structurales, Centre National de la Recherche Scientifique, Unité Propre de Recherche 3082, 91 198 Gif-sur-Yvette Cedex, France.
Dimitri Topalis
Luigi A Agrofoglio
Sylvie Pochet
Jan Balzarini
Dominique Deville-Bonne
Philippe Meyer
Centre National de la Recherche Scientifique · FRLaboratoire d'Enzymologie et Biochimie Structurales · FRInstitut de Chimie Organique et Analytique · FRInstitut Pasteur · FRRega Institute for Medical Research · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unlike most DNA viruses, poxviruses replicate in the cytoplasm of host cells. They encode enzymes needed for genome replication and transcription, including their own thymidine and thymidylate kinases. Some herpes viruses encode only 1 enzyme catalyzing both reactions, a peculiarity used for prodrug activation to obtain maximum specificity. We have solved the crystal structures of vaccinia virus thymidylate kinase bound to TDP or brivudin monophosphate. Although the viral and human enzymes have similar sequences (42% identity), they differ in their homodimeric association and active-site geometry. The vaccinia TMP kinase dimer arrangement is orthogonal and not antiparallel as in human enzyme. This different monomer orientation is related to the presence of a canal connecting the edge of the dimer interface to the TMP base binding pocket. Consequently, the pox enzyme accommodates nucleotides with bulkier bases, like brivudin monophosphate and dGMP; these are efficiently phosphorylated and stabilize the enzyme. The brivudin monophosphate-bound structure explains the structural basis for this specificity, opening the way to the rational development of specific antipox agents that may also be suitable for poxvirus TMP kinase gene-based chemotherapy of cancer.

Indexed as

Amino Acid SequenceAntiviral AgentsBromodeoxyuridineCalorimetry, Differential ScanningCatalytic DomainCrystallography, X-RayDimerizationHumansModels, MolecularMolecular Sequence DataNucleoside-Phosphate KinaseProtein Structure, QuaternarySubstrate SpecificityVaccinia virusAntiviral AgentsbrivudineBromodeoxyuridinedTMP kinaseNucleoside-Phosphate Kinase

Identifiers

PMID18971333
PMCPMC2579350
OpenAlexW2042574734

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.