Evidence map›Paper›PMID 18971330›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Evolution of MDA-5/RIG-I-dependent innate immunity: independent evolution by domain grafting.

Devanand Sarkar, Rob Desalle, Paul B Fisher

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 77 citations in OpenAlex.

  1. Review
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  5. DNA double-strand break repair and nucleic acid-related immunity.Acta biochimica et biophysica Sinica · 2022
    Review
  6. Divergences of theInternational journal of molecular sciences · 2022
    Article
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  10. Review
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  15. Review
  16. Article
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  18. Review
  19. Loss of RIG-I leads to a functional replacement with MDA5 in the Chinese tree shrew.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. Molecular cloning, characterization and expression analysis of woodchuck retinoic acid-inducible gene I.Journal of Huazhong University of Science and Technology. Medical sciences = Hua zhong ke ji da xue xue bao. Yi xue Ying De wen ban = Huazhong keji daxue xuebao. Yixue Yingdewen ban · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Devanand SarkarDepartment of Human and Molecular Genetics, Institute of Molecular Medicine, Massey Cancer Center, School of Medicine, Virginia Commonwealth University, Richmond, VA 23298, USA. dsarkar@vcu.edu
Rob Desalle
Paul B Fisher
Virginia Commonwealth University · USAmerican Museum of Natural History · US

Funding

Mda-5: Novel Apoptosis Inducing GeneR01GM068448 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI FISHER, PAUL B · 2004 to 2007
$1.2M
NIGMS NIH HHS GM068448NIGMS NIH HHS R01 GM068448
6 · The paper itself

Abstract

Type I Interferons (IFNs) are requisite components in antiviral innate immunity. Classically, a Toll-like receptor-dependent pathway induces type I interferons. However, recent recognition of melanoma differentiation associated gene-5 (MDA-5) and retinoic acid inducible gene-I (RIG-I) as primary sensors of RNA viruses for type I interferon induction highlights a potentially unique pathway for innate immunity. Our present investigation tracing the phylogenetic origin of MDA-5 and RIG-I domain arrangement (CARD1-CARD2-helicase-DEAD/DEAH) indicates that these proteins originated specifically in mammals, firmly linking this family of proteins with interferons in a highly derived evolutionary development of innate immunity. MDA-5, but not RIG-I, orthologs are found in fish, indicating that MDA-5 might have evolved before RIG-I. Our analyses also reveal that the MDA-5 and RIG-I domain arrangement evolved independently by domain grafting and not by a simple gene-duplication event of the entire four-domain arrangement, which may have been initiated by differential sensitivity of these proteins to viral infection.

Indexed as

Evolution, MolecularAnimalsCARD Signaling Adaptor ProteinsCell DifferentiationDEAD-box RNA HelicasesHumansImmunity, InnatePhylogenyProtein Structure, TertiarySignal TransductionCARD Signaling Adaptor ProteinsDEAD-box RNA Helicases

Identifiers

PMID18971330
PMCPMC2579374
OpenAlexW2005530726

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.