Evidence map›Paper›PMID 18971272›Full record

ArticleJournal of virology2009

Bromodomain protein Brd4 regulates human immunodeficiency virus transcription through phosphorylation of CDK9 at threonine 29.

Meisheng Zhou, Keven Huang, Kyung-Jin Jung, Won-Kyung Cho, Zach Klase, Fatah Kashanchi, Cynthia A Pise-Masison, John N Brady

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Meisheng ZhouVirus Tumor Biology Section, Laboratory of Cellular Oncology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Keven Huang
Kyung-Jin Jung
Won-Kyung Cho
Zach Klase
Fatah Kashanchi
Cynthia A Pise-Masison
John N Brady
National Institutes of Health · USCenter for Cancer Research · USGeorge Washington University · USNational Cancer Institute · US

Funding

Regulation of HTLV-1 TranscriptionZIABC011272 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MASISON, CYNTHIA · 2010 to 2010
$371k
6 · The paper itself

Abstract

Positive transcription elongation factor b (P-TEFb), composed of cyclin-dependent kinase 9 (CDK9) and cyclin T, is a global transcription factor for eukaryotic gene expression, as well as a key factor for human immunodeficiency virus (HIV) transcription elongation. P-TEFb phosphorylates the carboxyl-terminal domain (CTD) of the large subunit of RNA polymerase II (RNAP II), facilitating the transition from nonprocessive to processive transcription elongation. Recently, the bromodomain protein Brd4 has been shown to interact with the low-molecular-weight, active P-TEFb complex and recruit P-TEFb to the HIV type 1 long terminal repeat (LTR) promoter. However, the subsequent events through which Brd4 regulates CDK9 kinase activity and RNAP II-dependent transcription are not clearly understood. Here we provide evidence that Brd4 regulates P-TEFb kinase activity by inducing a negative pathway. Moreover, by analyzing stepwise initiation and elongation complexes, we demonstrate that P-TEFb activity is regulated in the transcription complex. Brd4 induces phosphorylation of CDK9 at threonine 29 (T29) in the HIV transcription initiation complex, inhibiting CDK9 kinase activity. P-TEFb inhibition is transient, as Brd4 is released from the transcription complex between positions +14 and +36. Removal of the phosphate group at T29 by an incoming phosphatase released P-TEFb activity, resulting in increased RNAP II CTD phosphorylation and transcription. Finally, we present chromatin immunoprecipitation studies showing that CDK9 with phosphorylated T29 is associated with the HIV promoter region in the integrated and transcriptionally silent HIV genome.

Indexed as

Virus ReplicationBromodomain Containing ProteinsCell Cycle ProteinsChromatin ImmunoprecipitationCyclin-Dependent Kinase 9HeLa CellsHIVHumansNuclear ProteinsPhosphorylationPositive Transcriptional Elongation Factor BProtein BindingRNA, ViralThreonineTranscription FactorsTranscription, GeneticBRD4 protein, humanBromodomain Containing ProteinsCDK9 protein, humanCell Cycle ProteinsCyclin-Dependent Kinase 9Nuclear ProteinsPositive Transcriptional Elongation Factor BRNA, ViralThreonineTranscription Factors

Identifiers

PMID18971272
PMCPMC2612389
OpenAlexW2108443798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.